Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10k11r
         (763 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0624 - 19434168-19435352                                         32   0.57 
12_01_0643 + 5435106-5435651,5437525-5437634,5437891-5438038           30   1.7  
02_02_0461 + 10534733-10536302,10536347-10536396,10536845-10538227     29   5.3  
12_02_0874 + 23915303-23915543,23915630-23915713,23915797-239163...    28   7.1  
09_04_0723 + 19736958-19737107,19737979-19738480,19738911-197390...    28   9.3  
08_01_0029 - 216526-216621,216706-216854,217489-217594,218650-21...    28   9.3  

>08_02_0624 - 19434168-19435352
          Length = 394

 Score = 31.9 bits (69), Expect = 0.57
 Identities = 17/57 (29%), Positives = 29/57 (50%)
 Frame = +2

Query: 326 VEIRSTILYRGNTVFTIRAHGARAQGSHSQGAPKDRQFLSHVYSQNIFVEHSTLFSQ 496
           +E+RST++ +    F+   HGA A   H +G+  D    S  +    F+E  T+ S+
Sbjct: 87  LELRSTVVEKVTARFSFHVHGASASSLHMRGSFDDYTPTSKSWGYPKFMEIETVESE 143


>12_01_0643 + 5435106-5435651,5437525-5437634,5437891-5438038
          Length = 267

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = -3

Query: 419 PPENGSPGHGPRVPLW*RQYCP 354
           PP + S GHGPR   W R+ CP
Sbjct: 50  PPASRSRGHGPRRRSWRRRPCP 71


>02_02_0461 + 10534733-10536302,10536347-10536396,10536845-10538227
          Length = 1000

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 12/24 (50%), Positives = 17/24 (70%)
 Frame = -3

Query: 356 PYTRWCSLSLPSIIRLPIVSCFNV 285
           P   WCS +LP+++RL I SC N+
Sbjct: 791 PLRVWCS-NLPALLRLKIYSCANL 813


>12_02_0874 +
           23915303-23915543,23915630-23915713,23915797-23916312,
           23916426-23916482,23916630-23916802,23916886-23917014,
           23917102-23917296,23917381-23917503,23918171-23918284
          Length = 543

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 9/33 (27%), Positives = 21/33 (63%)
 Frame = -1

Query: 283 FSQKSFVSNCKKNYYIWSNFFKIYFTIFRFVYV 185
           +++K  +S  + N+Y+  N+F+I   + RF ++
Sbjct: 450 YNEKPVLSRPQHNFYVGPNYFEIDLDVHRFSFI 482


>09_04_0723 +
           19736958-19737107,19737979-19738480,19738911-19739061,
           19739659-19739766,19739789-19739818,19739894-19740303,
           19740797-19740882,19740989-19741058,19741413-19741585,
           19741644-19741725,19742131-19742288
          Length = 639

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 15/47 (31%), Positives = 22/47 (46%)
 Frame = -1

Query: 484 CTVLDKNVLRINV*EKLSVFRSPLRMGALGTGPVCPYGKDSIAPIQD 344
           CT  +K    +N   K  VFR+    GA G     P  K+++ P+ D
Sbjct: 376 CTSRNKRSSNVNSKRKSEVFRATAADGAEGLDSEIPRVKNALPPVVD 422


>08_01_0029 -
           216526-216621,216706-216854,217489-217594,218650-218841
          Length = 180

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
 Frame = -2

Query: 279 RKKVLFQIVKKIITFGPIFLKYTLQ-FLGLFMCNFEYMNY 163
           R+ V FQ++   +TF  +FL   +  FLG    +F   NY
Sbjct: 86  RRNVNFQLILSALTFSGVFLAERINTFLGQHWKSFSSQNY 125


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,754,675
Number of Sequences: 37544
Number of extensions: 349124
Number of successful extensions: 763
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 744
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 763
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2039640244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)