Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10k11r
         (763 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_1791| Best HMM Match : CCT (HMM E-Value=2.2)                        30   2.4  
SB_50952| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.2  
SB_46050| Best HMM Match : RRM_1 (HMM E-Value=1.7e-33)                 28   9.5  

>SB_1791| Best HMM Match : CCT (HMM E-Value=2.2)
          Length = 386

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 8/27 (29%), Positives = 18/27 (66%)
 Frame = -2

Query: 357 PLYKMVLLISTLHNTVTYCKLFQCYFR 277
           P Y +++++S   +  +YC++  C+FR
Sbjct: 155 PFYSLLIVVSFSESLASYCRISSCHFR 181


>SB_50952| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 67

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 18/45 (40%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
 Frame = -2

Query: 603 LVTISITVSFGFLLSKIFYY-RHSIFLVNNNTF*LLICEKSVLCS 472
           L T S T      L+K  Y  RHSI+  N+ T  LL+C   V  S
Sbjct: 2   LYTDSTTPPHALFLTKRRYVPRHSIYFCNSRTMRLLLCRLLVRAS 46


>SB_46050| Best HMM Match : RRM_1 (HMM E-Value=1.7e-33)
          Length = 392

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +1

Query: 325 GRDKEHHLV*GQYCLYHKGTRGPCPGLPFSGG 420
           G+  +HH + G      +G RGP  G+P SGG
Sbjct: 313 GQRMQHHDIRGPDPRGDRGPRGPPSGVPTSGG 344


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,645,718
Number of Sequences: 59808
Number of extensions: 452181
Number of successful extensions: 803
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 734
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 803
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2082369341
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)