Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10k11r
         (763 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024753-8|AAF60455.1|  174|Caenorhabditis elegans Hypothetical ...    29   3.6  
U52002-9|AAB37727.2|  839|Caenorhabditis elegans Human dice1 (de...    28   6.3  
U52002-8|AAU05577.1|  842|Caenorhabditis elegans Human dice1 (de...    28   6.3  
Z70212-8|CAB54284.1|  320|Caenorhabditis elegans Hypothetical pr...    28   8.3  
L10986-11|AAK93846.2|  203|Caenorhabditis elegans Hypothetical p...    28   8.3  

>AC024753-8|AAF60455.1|  174|Caenorhabditis elegans Hypothetical
           protein Y23H5B.8 protein.
          Length = 174

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 15/44 (34%), Positives = 24/44 (54%)
 Frame = -2

Query: 261 QIVKKIITFGPIFLKYTLQFLGLFMCNFEYMNYSMKFIPTFLKN 130
           +++K I+ FG +F++   + LGL +  F       KF  T LKN
Sbjct: 79  ELLKSILRFGTMFMRSACEDLGLKVGPFSKCMEKTKFDVTTLKN 122


>U52002-9|AAB37727.2|  839|Caenorhabditis elegans Human dice1
           (deleted in cancer)homolog protein 1, isoform a protein.
          Length = 839

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
 Frame = +1

Query: 250 FYNLKQNFFAKITLKQLTIG-NRIMEGRDKEHHLV*GQYCLYHKGTRGPCPGL 405
           F++L +NF     +KQ T G NR+M GR+ + + +      Y K  +  C  L
Sbjct: 24  FFDLAKNFIENF-IKQRTKGDNRMMVGRETDKYFLMTTQARYPKNVKVACEKL 75


>U52002-8|AAU05577.1|  842|Caenorhabditis elegans Human dice1
           (deleted in cancer)homolog protein 1, isoform b protein.
          Length = 842

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
 Frame = +1

Query: 250 FYNLKQNFFAKITLKQLTIG-NRIMEGRDKEHHLV*GQYCLYHKGTRGPCPGL 405
           F++L +NF     +KQ T G NR+M GR+ + + +      Y K  +  C  L
Sbjct: 24  FFDLAKNFIENF-IKQRTKGDNRMMVGRETDKYFLMTTQARYPKNVKVACEKL 75


>Z70212-8|CAB54284.1|  320|Caenorhabditis elegans Hypothetical
           protein R04D3.12 protein.
          Length = 320

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 19/70 (27%), Positives = 30/70 (42%), Gaps = 6/70 (8%)
 Frame = -2

Query: 315 TVTYCKLFQ-----CYFRKKVLFQIVKKIITFGPIFLKYTLQFLGLFMCNFEYM-NYSMK 154
           T  YC+ F+     C+++   L  +   +  +G  FLKY +    L M   E M  Y + 
Sbjct: 80  TYGYCRFFEPWICNCFYQIMQLSVLASHLTIYGTFFLKYRM-VTKLQMSQVEIMKTYVVF 138

Query: 153 FIPTFLKNCF 124
           + P  L   F
Sbjct: 139 YFPLILSTIF 148


>L10986-11|AAK93846.2|  203|Caenorhabditis elegans Hypothetical
           protein F10E9.10 protein.
          Length = 203

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 13/52 (25%), Positives = 27/52 (51%), Gaps = 4/52 (7%)
 Frame = -2

Query: 369 KTVLPLY----KMVLLISTLHNTVTYCKLFQCYFRKKVLFQIVKKIITFGPI 226
           +T LPLY     +++  S L+  + YCK + C   K+  +   + ++ + P+
Sbjct: 15  RTRLPLYLYTVSIIISCSLLYWNLLYCKNYDCVVEKEFRWGSTRHLLQYFPV 66


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,922,906
Number of Sequences: 27780
Number of extensions: 370013
Number of successful extensions: 823
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 792
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 823
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1819579054
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)