Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10k11r
         (763 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g35820.1 68417.m05089 oxidoreductase, 2OG-Fe(II) oxygenase fa...    29   4.5  
At5g13570.1 68418.m01568 MutT/nudix family protein similar to mR...    28   5.9  
At1g28260.2 68414.m03469 expressed protein                             28   7.8  
At1g28260.1 68414.m03468 expressed protein                             28   7.8  

>At4g35820.1 68417.m05089 oxidoreductase, 2OG-Fe(II) oxygenase
           family protein similar to prolyl 4-hydroxylase, alpha
           subunit, from Mus musculus [SP|Q60715], Homo sapiens
           [GI:18073925]; contains PF03171 2OG-Fe(II) oxygenase
           superfamily domain
          Length = 272

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = +2

Query: 566 RNPKETVIEIVTKKPAAF*YH 628
           R P E  +E++TK+P AF YH
Sbjct: 81  RFPNERWLEVITKEPRAFVYH 101


>At5g13570.1 68418.m01568 MutT/nudix family protein similar to
           mRNA-decapping enzyme [Homo sapiens] GI:23268269;
           contains Pfam profile PF00293: NUDIX domain
          Length = 373

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 11/49 (22%), Positives = 24/49 (48%)
 Frame = +2

Query: 329 EIRSTILYRGNTVFTIRAHGARAQGSHSQGAPKDRQFLSHVYSQNIFVE 475
           E+R   +   NT  T+ +H  +    HSQ       F++  ++Q++ ++
Sbjct: 317 ELRKGTMESHNTTATVESHNTKPVVDHSQDIKPGGSFINFKFNQSVILQ 365


>At1g28260.2 68414.m03469 expressed protein
          Length = 880

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
 Frame = +3

Query: 414 RGLRKTDNFSHTFILKTFLSSTVHFFHK--SVIRRYYY 521
           +GL+  D+  H    K FLS    F+    S +R YY+
Sbjct: 83  KGLKTNDHAKHMKAFKLFLSKAAEFYQNLISKVRGYYH 120


>At1g28260.1 68414.m03468 expressed protein
          Length = 880

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
 Frame = +3

Query: 414 RGLRKTDNFSHTFILKTFLSSTVHFFHK--SVIRRYYY 521
           +GL+  D+  H    K FLS    F+    S +R YY+
Sbjct: 83  KGLKTNDHAKHMKAFKLFLSKAAEFYQNLISKVRGYYH 120


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,213,723
Number of Sequences: 28952
Number of extensions: 309507
Number of successful extensions: 598
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 591
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 598
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1702303248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)