Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10k11f
         (618 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2 |Schizo...    30   0.23 
SPBC1289.13c |||alpha-1,2-galactosyltransferase|Schizosaccharomy...    27   2.2  
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S...    25   6.6  
SPAC3A12.06c |||sodium/calcium exchanger |Schizosaccharomyces po...    25   6.6  
SPAC1250.02 |mug95||sequence orphan|Schizosaccharomyces pombe|ch...    25   6.6  
SPAC3A12.16c |tim17||TIM23 translocase complex subunit Tim17|Sch...    25   8.8  
SPCC4G3.18 |||conserved fungal family|Schizosaccharomyces pombe|...    25   8.8  
SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr...    25   8.8  

>SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1513

 Score = 30.3 bits (65), Expect = 0.23
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = -1

Query: 528 PCMLIAIFNDLDSVKVNSNLYGVVFYCLDGWTSS 427
           PC+    F+DL S+ +     G+VFY   GWT S
Sbjct: 424 PCLFNYSFSDLSSLTITRLSIGMVFY-THGWTKS 456


>SPBC1289.13c |||alpha-1,2-galactosyltransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 375

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 13/38 (34%), Positives = 16/38 (42%)
 Frame = -3

Query: 364 PHPSNRNALLLHGRNRQGGGTYPCGLTRRPTTSNNANY 251
           PHP N   +LL G N Q   + P     R    N  +Y
Sbjct: 97  PHPENSKIVLLMGSNAQNDPSSPLNPYIRTIIKNRRDY 134


>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
           Mok11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2397

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 15/47 (31%), Positives = 19/47 (40%)
 Frame = -1

Query: 576 IEYLPNPAALETVAPTPCMLIAIFNDLDSVKVNSNLYGVVFYCLDGW 436
           IEYLPN     +   T  M+    N L ++    N  GV     D W
Sbjct: 591 IEYLPNSGINPSNVGTFSMVRGAINSLQNISSEYNFPGVKTSSSDVW 637


>SPAC3A12.06c |||sodium/calcium exchanger |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 743

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 13/27 (48%), Positives = 18/27 (66%)
 Frame = -1

Query: 264 ITQIIMLRI*FLLHDVIPSPWKSIVNI 184
           +T  I+L I F+LHD   S W+S+V I
Sbjct: 220 LTGTILLVIMFVLHDGSLSIWQSLVMI 246


>SPAC1250.02 |mug95||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 178

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = -3

Query: 352 NRNALLLHGRNRQGGGTYPCGLTRRPTTSNNANYNVADLIFI 227
           N   ++LHG N Q      CGL    T+SN   + +A   F+
Sbjct: 106 NGELIVLHGINHQAAMLTACGLF-MVTSSNTNKWKIAFASFL 146


>SPAC3A12.16c |tim17||TIM23 translocase complex subunit
           Tim17|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 164

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 10/36 (27%), Positives = 18/36 (50%)
 Frame = -1

Query: 528 PCMLIAIFNDLDSVKVNSNLYGVVFYCLDGWTSSQP 421
           PC  + I ND  +      + G +++ + GW +S P
Sbjct: 10  PCPYV-ILNDFGAAFSMGTIGGAIWHSIKGWRNSPP 44


>SPCC4G3.18 |||conserved fungal family|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 828

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -2

Query: 425 SPPGVKWLLEF*DLSIVTTAAPPFKPKRIT 336
           SPP V    E+ + SI+  + PPF+ + IT
Sbjct: 611 SPPQVDSQSEYKESSILAPSNPPFETESIT 640


>SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1275

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 12/28 (42%), Positives = 14/28 (50%)
 Frame = -2

Query: 425 SPPGVKWLLEF*DLSIVTTAAPPFKPKR 342
           SPP  +  L F D S     +PPF  KR
Sbjct: 36  SPPSFQKRLSFSDFSTTRLFSPPFLSKR 63


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,806,490
Number of Sequences: 5004
Number of extensions: 59285
Number of successful extensions: 133
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 133
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 271646730
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)