Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10k11f
         (618 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_02_0499 - 9917891-9918148,9918240-9918494,9918769-9918940,991...    30   1.7  
05_05_0156 + 22792783-22793410,22797153-22797227,22797644-227988...    29   3.0  
01_06_1749 - 39636951-39638102                                         29   3.9  
07_01_0068 - 495582-497981                                             28   6.8  
07_01_0040 + 325737-328181                                             28   6.8  
08_01_0304 - 2502760-2502774,2502844-2502921,2503035-2503103,250...    27   9.0  
04_04_0701 + 27373057-27374013                                         27   9.0  

>09_02_0499 - 9917891-9918148,9918240-9918494,9918769-9918940,
            9919056-9919283,9919628-9919761,9919842-9919925,
            9920007-9920297,9920569-9920901,9921029-9921171,
            9921266-9921379,9921470-9921626,9921709-9921812,
            9921914-9922074,9922158-9922474,9922574-9922855,
            9923205-9923506,9923603-9923693,9923864-9923917,
            9924052-9924128,9924213-9924372,9924473-9924557,
            9924635-9924723,9925791-9925925
          Length = 1341

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 21/87 (24%), Positives = 37/87 (42%), Gaps = 2/87 (2%)
 Frame = -1

Query: 552  ALETVAPTPCMLIAIFNDLDSVKVNSNLYGVVFYCLDG--WTSSQPTWC*VVTGVLRSQY 379
            A    +P P  L  +  +L  + V S +YGV+ Y + G  WT+++  W         S Y
Sbjct: 1158 AAHMYSPLPYALGQVAIELPYILVQSLIYGVLVYAMIGFEWTAAKFFWYLFFMYFTLSYY 1217

Query: 378  SYNGCPTLQTETHYCYTAEIDRAVVLI 298
            ++ G  ++     Y   + +  A   I
Sbjct: 1218 TFYGMMSVGLTPSYNVASVVSTAFYAI 1244


>05_05_0156 +
           22792783-22793410,22797153-22797227,22797644-22798879,
           22798947-22799155,22799240-22800209,22800395-22800465
          Length = 1062

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 12/37 (32%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = +2

Query: 224 CNKNQIRNIIICVITG-GRTSCESARISTTALSISAV 331
           CNKN IRN+++    G G+T+   + ++T  ++   V
Sbjct: 218 CNKNNIRNVLVIADAGHGKTAILDSLVATAGITSQEV 254


>01_06_1749 - 39636951-39638102
          Length = 383

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 14/31 (45%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
 Frame = -2

Query: 383 SIVTTAAPPFKPKRITATRQK*TGR-WYLSV 294
           S+ + AAPPF P RIT+      GR +++SV
Sbjct: 165 SVASAAAPPFDPSRITSYAAHPNGRAFFVSV 195


>07_01_0068 - 495582-497981
          Length = 799

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = -3

Query: 469 IWSCFLLLRWVDELTAHLVLS 407
           IW+C+LL  WV +L   L+L+
Sbjct: 49  IWACYLLADWVADLALGLLLN 69


>07_01_0040 + 325737-328181
          Length = 814

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = -3

Query: 469 IWSCFLLLRWVDELTAHLVLS 407
           +WSC+LL  WV +L   L+L+
Sbjct: 49  VWSCYLLADWVADLGLGLLLN 69


>08_01_0304 -
           2502760-2502774,2502844-2502921,2503035-2503103,
           2503200-2503289,2503400-2503517,2505548-2505678,
           2505756-2506025,2507175-2507308,2507635-2508088
          Length = 452

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 12/24 (50%), Positives = 13/24 (54%)
 Frame = +2

Query: 140 GWVGANSSNEIRT*QMFTIDFHGE 211
           GW GAN   +I T      DFHGE
Sbjct: 166 GWDGANKRAKILTAASVVCDFHGE 189


>04_04_0701 + 27373057-27374013
          Length = 318

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 11/19 (57%), Positives = 12/19 (63%)
 Frame = -2

Query: 551 PLKPLRPHPVCLLPFLTIS 495
           PL PL PHP    P LT+S
Sbjct: 300 PLSPLSPHPALGFPQLTVS 318


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,009,230
Number of Sequences: 37544
Number of extensions: 416293
Number of successful extensions: 836
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 820
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 836
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1490248872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)