BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= fner10k11f (618 letters) Database: rice 37,544 sequences; 14,793,348 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value 09_02_0499 - 9917891-9918148,9918240-9918494,9918769-9918940,991... 30 1.7 05_05_0156 + 22792783-22793410,22797153-22797227,22797644-227988... 29 3.0 01_06_1749 - 39636951-39638102 29 3.9 07_01_0068 - 495582-497981 28 6.8 07_01_0040 + 325737-328181 28 6.8 08_01_0304 - 2502760-2502774,2502844-2502921,2503035-2503103,250... 27 9.0 04_04_0701 + 27373057-27374013 27 9.0 >09_02_0499 - 9917891-9918148,9918240-9918494,9918769-9918940, 9919056-9919283,9919628-9919761,9919842-9919925, 9920007-9920297,9920569-9920901,9921029-9921171, 9921266-9921379,9921470-9921626,9921709-9921812, 9921914-9922074,9922158-9922474,9922574-9922855, 9923205-9923506,9923603-9923693,9923864-9923917, 9924052-9924128,9924213-9924372,9924473-9924557, 9924635-9924723,9925791-9925925 Length = 1341 Score = 29.9 bits (64), Expect = 1.7 Identities = 21/87 (24%), Positives = 37/87 (42%), Gaps = 2/87 (2%) Frame = -1 Query: 552 ALETVAPTPCMLIAIFNDLDSVKVNSNLYGVVFYCLDG--WTSSQPTWC*VVTGVLRSQY 379 A +P P L + +L + V S +YGV+ Y + G WT+++ W S Y Sbjct: 1158 AAHMYSPLPYALGQVAIELPYILVQSLIYGVLVYAMIGFEWTAAKFFWYLFFMYFTLSYY 1217 Query: 378 SYNGCPTLQTETHYCYTAEIDRAVVLI 298 ++ G ++ Y + + A I Sbjct: 1218 TFYGMMSVGLTPSYNVASVVSTAFYAI 1244 >05_05_0156 + 22792783-22793410,22797153-22797227,22797644-22798879, 22798947-22799155,22799240-22800209,22800395-22800465 Length = 1062 Score = 29.1 bits (62), Expect = 3.0 Identities = 12/37 (32%), Positives = 22/37 (59%), Gaps = 1/37 (2%) Frame = +2 Query: 224 CNKNQIRNIIICVITG-GRTSCESARISTTALSISAV 331 CNKN IRN+++ G G+T+ + ++T ++ V Sbjct: 218 CNKNNIRNVLVIADAGHGKTAILDSLVATAGITSQEV 254 >01_06_1749 - 39636951-39638102 Length = 383 Score = 28.7 bits (61), Expect = 3.9 Identities = 14/31 (45%), Positives = 20/31 (64%), Gaps = 1/31 (3%) Frame = -2 Query: 383 SIVTTAAPPFKPKRITATRQK*TGR-WYLSV 294 S+ + AAPPF P RIT+ GR +++SV Sbjct: 165 SVASAAAPPFDPSRITSYAAHPNGRAFFVSV 195 >07_01_0068 - 495582-497981 Length = 799 Score = 27.9 bits (59), Expect = 6.8 Identities = 10/21 (47%), Positives = 15/21 (71%) Frame = -3 Query: 469 IWSCFLLLRWVDELTAHLVLS 407 IW+C+LL WV +L L+L+ Sbjct: 49 IWACYLLADWVADLALGLLLN 69 >07_01_0040 + 325737-328181 Length = 814 Score = 27.9 bits (59), Expect = 6.8 Identities = 10/21 (47%), Positives = 15/21 (71%) Frame = -3 Query: 469 IWSCFLLLRWVDELTAHLVLS 407 +WSC+LL WV +L L+L+ Sbjct: 49 VWSCYLLADWVADLGLGLLLN 69 >08_01_0304 - 2502760-2502774,2502844-2502921,2503035-2503103, 2503200-2503289,2503400-2503517,2505548-2505678, 2505756-2506025,2507175-2507308,2507635-2508088 Length = 452 Score = 27.5 bits (58), Expect = 9.0 Identities = 12/24 (50%), Positives = 13/24 (54%) Frame = +2 Query: 140 GWVGANSSNEIRT*QMFTIDFHGE 211 GW GAN +I T DFHGE Sbjct: 166 GWDGANKRAKILTAASVVCDFHGE 189 >04_04_0701 + 27373057-27374013 Length = 318 Score = 27.5 bits (58), Expect = 9.0 Identities = 11/19 (57%), Positives = 12/19 (63%) Frame = -2 Query: 551 PLKPLRPHPVCLLPFLTIS 495 PL PL PHP P LT+S Sbjct: 300 PLSPLSPHPALGFPQLTVS 318 Database: rice Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 14,793,348 Number of sequences in database: 37,544 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 19,009,230 Number of Sequences: 37544 Number of extensions: 416293 Number of successful extensions: 836 Number of sequences better than 10.0: 7 Number of HSP's better than 10.0 without gapping: 820 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 836 length of database: 14,793,348 effective HSP length: 79 effective length of database: 11,827,372 effective search space used: 1490248872 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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