Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10k11f
(618 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_34220| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.0
SB_35153| Best HMM Match : Zip (HMM E-Value=9.1e-05) 29 4.0
SB_6571| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.3
SB_5677| Best HMM Match : fn3 (HMM E-Value=0.0092) 28 5.3
SB_355| Best HMM Match : zf-UBR1 (HMM E-Value=2e-20) 28 5.3
SB_19291| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.0
SB_39831| Best HMM Match : Kazal_1 (HMM E-Value=2.4e-19) 28 7.0
SB_53367| Best HMM Match : RVT_1 (HMM E-Value=0) 27 9.2
SB_29147| Best HMM Match : TAFH (HMM E-Value=4.1) 27 9.2
SB_18309| Best HMM Match : Exo_endo_phos (HMM E-Value=2.3e-09) 27 9.2
SB_53706| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.2
SB_52564| Best HMM Match : Exo_endo_phos (HMM E-Value=3.2e-09) 27 9.2
SB_31078| Best HMM Match : PHD (HMM E-Value=7.4e-09) 27 9.2
SB_6967| Best HMM Match : PHD (HMM E-Value=1.2e-08) 27 9.2
>SB_34220| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 452
Score = 28.7 bits (61), Expect = 4.0
Identities = 14/52 (26%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Frame = -3
Query: 304 TYPCGLTRRPTTSNNANYNVADLIF-ITRCYSFTVEVNREHLLSTYFIRRIG 152
T+ C + S +++++ A+L ITRCY+F ++E + T+++ + G
Sbjct: 33 THFCTRSHPNVRSIDSHFDKAELYHTITRCYAFIFIFSKETIDDTFYLNQYG 84
>SB_35153| Best HMM Match : Zip (HMM E-Value=9.1e-05)
Length = 651
Score = 28.7 bits (61), Expect = 4.0
Identities = 22/81 (27%), Positives = 35/81 (43%), Gaps = 2/81 (2%)
Frame = -3
Query: 436 DELTAHLVLSGYWSSKISV*LQRLPHPSNRNALLLHGRNRQGGGTYPCGLTRRPTTS--N 263
+ELT +L+ GY + + + R+ + S +AL H N + P T PT N
Sbjct: 416 NELTNYLLKRGYKPAYLERQILRVANISRIDALRPHNNNHKNSRRIPFVTTYNPTLPYIN 475
Query: 262 NANYNVADLIFITRCYSFTVE 200
N +L+ RC+ E
Sbjct: 476 NIISRNYNLLSSKRCHKVFTE 496
>SB_6571| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 182
Score = 28.3 bits (60), Expect = 5.3
Identities = 23/84 (27%), Positives = 37/84 (44%), Gaps = 5/84 (5%)
Frame = -3
Query: 436 DELTAHLVLSGYWSSKISV*LQRLPHPSNRNALLLHGRNRQGGGTYPCGLTRRPTTSN-- 263
+ELT +L+ GY + + + R+ + S +AL + N + P T PT N
Sbjct: 54 NELTNYLLKRGYKPAFLKRQILRVANTSRIDALRPYNNNHKNSRRIPFVTTYNPTRPNIN 113
Query: 262 ---NANYNVADLIFITRCYSFTVE 200
NYN+ L+ RC+ E
Sbjct: 114 DIIRRNYNL--LLSSKRCHKVFTE 135
>SB_5677| Best HMM Match : fn3 (HMM E-Value=0.0092)
Length = 1146
Score = 28.3 bits (60), Expect = 5.3
Identities = 25/91 (27%), Positives = 41/91 (45%), Gaps = 1/91 (1%)
Frame = -1
Query: 576 IEYLPNPAALETVAPTPCMLIAIFN-DLDSVKVNSNLYGVVFYCLDGWTSSQPTWC*VVT 400
+ LP P ++A ++ +N +LDSV + Y + F C DG +S P+
Sbjct: 1039 VSLLPPPKPNASIAVVQNGIVLSWNMNLDSVHEQIDNYEL-FACQDGTEASTPSIMWKKI 1097
Query: 399 GVLRSQYSYNGCPTLQTETHYCYTAEIDRAV 307
GV+++ C Q + CY + RAV
Sbjct: 1098 GVVKALPLPMACTLTQFSSGSCYKFAV-RAV 1127
>SB_355| Best HMM Match : zf-UBR1 (HMM E-Value=2e-20)
Length = 949
Score = 28.3 bits (60), Expect = 5.3
Identities = 17/46 (36%), Positives = 21/46 (45%)
Frame = +3
Query: 9 FVYHSCFICGSSYIRPCQKEFGCRDCFRSRQNVATDFLFFIA*MGG 146
FV + C CG I PC C DCF + + DF F + GG
Sbjct: 85 FVAYRCRDCG---ISPCMSL--CADCFHAGNHEGHDFNMFKSQAGG 125
>SB_19291| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1258
Score = 27.9 bits (59), Expect = 7.0
Identities = 16/40 (40%), Positives = 20/40 (50%)
Frame = -3
Query: 415 VLSGYWSSKISV*LQRLPHPSNRNALLLHGRNRQGGGTYP 296
VL WS K Q S+ N+ L +NR+G GTYP
Sbjct: 705 VLQDLWSPKPDPPTQDSSFSSD-NSFSLEDKNREGPGTYP 743
>SB_39831| Best HMM Match : Kazal_1 (HMM E-Value=2.4e-19)
Length = 173
Score = 27.9 bits (59), Expect = 7.0
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = +2
Query: 218 TSCNKNQIRNIIICVITGGRTSCESARISTTAL 316
T+C+K + R IC + GGR C R + L
Sbjct: 102 TACSKVRCRGNSICKVAGGRARCVPLRATCKQL 134
>SB_53367| Best HMM Match : RVT_1 (HMM E-Value=0)
Length = 1025
Score = 27.5 bits (58), Expect = 9.2
Identities = 11/35 (31%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
Frame = -3
Query: 298 PCGLTRRPTTSNN--ANYNVADLIFITRCYSFTVE 200
PCG+ ++PT SN + D+ + T+C + T +
Sbjct: 106 PCGICQKPTRSNQRAIQCDECDMWYHTKCIAMTAQ 140
>SB_29147| Best HMM Match : TAFH (HMM E-Value=4.1)
Length = 249
Score = 27.5 bits (58), Expect = 9.2
Identities = 23/84 (27%), Positives = 37/84 (44%), Gaps = 5/84 (5%)
Frame = -3
Query: 436 DELTAHLVLSGYWSSKISV*LQRLPHPSNRNALLLHGRNRQGGGTYPCGLTRRPTTSN-- 263
+ELT +L+ GY + + + R+ + S +AL + N + P T PT N
Sbjct: 107 NELTNYLLKRGYKPAFLKRQILRVANISRIDALRSNNNNHKNSRRIPFVTTYNPTLPNIN 166
Query: 262 ---NANYNVADLIFITRCYSFTVE 200
NYN+ L+ RC+ E
Sbjct: 167 NIIRRNYNL--LLSSKRCHKVFTE 188
>SB_18309| Best HMM Match : Exo_endo_phos (HMM E-Value=2.3e-09)
Length = 895
Score = 27.5 bits (58), Expect = 9.2
Identities = 11/35 (31%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
Frame = -3
Query: 298 PCGLTRRPTTSNN--ANYNVADLIFITRCYSFTVE 200
PCG+ ++PT SN + D+ + T+C + T +
Sbjct: 106 PCGICQKPTRSNQRAIQCDECDMWYHTKCIAMTAQ 140
>SB_53706| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1172
Score = 27.5 bits (58), Expect = 9.2
Identities = 22/72 (30%), Positives = 33/72 (45%)
Frame = -3
Query: 448 LRWVDELTAHLVLSGYWSSKISV*LQRLPHPSNRNALLLHGRNRQGGGTYPCGLTRRPTT 269
L++ D A V S W+SK ++ Q H R A L G + GG + L R+
Sbjct: 442 LKYRDVWRAAQVESKVWNSKENLGAQPHAHIDMRAAYLGCGDSVFGGASDAIDLVRKYVF 501
Query: 268 SNNANYNVADLI 233
N Y +AD++
Sbjct: 502 PTNV-YRIADVV 512
>SB_52564| Best HMM Match : Exo_endo_phos (HMM E-Value=3.2e-09)
Length = 748
Score = 27.5 bits (58), Expect = 9.2
Identities = 11/35 (31%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
Frame = -3
Query: 298 PCGLTRRPTTSNN--ANYNVADLIFITRCYSFTVE 200
PCG+ ++PT SN + D+ + T+C + T +
Sbjct: 9 PCGICQKPTRSNQRAIQCDECDMWYHTKCIAMTAQ 43
>SB_31078| Best HMM Match : PHD (HMM E-Value=7.4e-09)
Length = 241
Score = 27.5 bits (58), Expect = 9.2
Identities = 11/35 (31%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
Frame = -3
Query: 298 PCGLTRRPTTSNN--ANYNVADLIFITRCYSFTVE 200
PCG+ ++PT SN + D+ + T+C + T +
Sbjct: 9 PCGICQKPTRSNQRAIQCDECDMWYHTKCIAMTAQ 43
>SB_6967| Best HMM Match : PHD (HMM E-Value=1.2e-08)
Length = 410
Score = 27.5 bits (58), Expect = 9.2
Identities = 11/35 (31%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
Frame = -3
Query: 298 PCGLTRRPTTSNN--ANYNVADLIFITRCYSFTVE 200
PCG+ ++PT SN + D+ + T+C + T +
Sbjct: 106 PCGICQKPTRSNQRAIQCDECDMWYHTKCIAMTAQ 140
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,333,143
Number of Sequences: 59808
Number of extensions: 453878
Number of successful extensions: 937
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 878
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 937
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1524174750
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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