Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10k11f
         (618 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81588-1|CAB04716.1|  281|Caenorhabditis elegans Hypothetical pr...    28   4.6  
U40029-15|ABD94114.1| 1824|Caenorhabditis elegans Hypothetical p...    28   4.6  
U40029-14|ABD94112.1| 2025|Caenorhabditis elegans Hypothetical p...    28   4.6  
U40029-13|ABD94113.1| 1884|Caenorhabditis elegans Hypothetical p...    28   4.6  

>Z81588-1|CAB04716.1|  281|Caenorhabditis elegans Hypothetical
           protein T07D10.1 protein.
          Length = 281

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 6/37 (16%)
 Frame = -1

Query: 423 PTWC*VVTGVLRSQYS------YNGCPTLQTETHYCY 331
           PTWC  VTG    ++       Y  CPT+ +E HY Y
Sbjct: 113 PTWC-SVTGARFHEFQCTPPAPYCPCPTILSEFHYTY 148


>U40029-15|ABD94114.1| 1824|Caenorhabditis elegans Hypothetical
           protein F10G7.10c protein.
          Length = 1824

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 13/40 (32%), Positives = 18/40 (45%)
 Frame = +3

Query: 27  FICGSSYIRPCQKEFGCRDCFRSRQNVATDFLFFIA*MGG 146
           F C +  + PC     C DCF S  +   D+  F +  GG
Sbjct: 150 FRCNTCALTPCMSL--CEDCFESNGHAGHDYTRFFSREGG 187


>U40029-14|ABD94112.1| 2025|Caenorhabditis elegans Hypothetical
           protein F10G7.10a protein.
          Length = 2025

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 13/40 (32%), Positives = 18/40 (45%)
 Frame = +3

Query: 27  FICGSSYIRPCQKEFGCRDCFRSRQNVATDFLFFIA*MGG 146
           F C +  + PC     C DCF S  +   D+  F +  GG
Sbjct: 150 FRCNTCALTPCMSL--CEDCFESNGHAGHDYTRFFSREGG 187


>U40029-13|ABD94113.1| 1884|Caenorhabditis elegans Hypothetical
           protein F10G7.10b protein.
          Length = 1884

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 13/40 (32%), Positives = 18/40 (45%)
 Frame = +3

Query: 27  FICGSSYIRPCQKEFGCRDCFRSRQNVATDFLFFIA*MGG 146
           F C +  + PC     C DCF S  +   D+  F +  GG
Sbjct: 150 FRCNTCALTPCMSL--CEDCFESNGHAGHDYTRFFSREGG 187


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,817,809
Number of Sequences: 27780
Number of extensions: 345783
Number of successful extensions: 723
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 691
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 723
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1342816466
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)