Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10k11f
         (618 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    24   1.4  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   2.4  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   2.4  
DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor pro...    22   4.2  
S78459-1|AAB34403.1|   50|Apis mellifera mast cell-degranulating...    22   5.5  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    22   5.5  
AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropi...    21   9.6  

>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 10/33 (30%), Positives = 17/33 (51%)
 Frame = +3

Query: 3   FFFVYHSCFICGSSYIRPCQKEFGCRDCFRSRQ 101
           F +  HSC  C   + R  Q++   R C +++Q
Sbjct: 77  FHYGVHSCEGCKGFFRRSIQQKIQYRPCTKNQQ 109


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = -3

Query: 373 QRLPHPSNRNALL-LHGRNRQGGGTYPCGLTR 281
           ++LP    ++ LL L+G NR+  G Y C + R
Sbjct: 372 RQLPGTGRQSELLRLNGINREDRGMYQCIVRR 403


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = -3

Query: 373 QRLPHPSNRNALL-LHGRNRQGGGTYPCGLTR 281
           ++LP    ++ LL L+G NR+  G Y C + R
Sbjct: 372 RQLPGTGRQSELLRLNGINREDRGMYQCIVRR 403


>DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor
           protein.
          Length = 405

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = +3

Query: 75  CRDCFRSRQNV 107
           CR CF+SR N+
Sbjct: 375 CRKCFKSRTNL 385


>S78459-1|AAB34403.1|   50|Apis mellifera mast cell-degranulating
           peptide protein.
          Length = 50

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = +2

Query: 5   FFRVSFMFYLWFFIHPSMSKGIWLQRLF*KPPECR 109
           FF +S +    +F+ P+MS     +R   KP  CR
Sbjct: 9   FFFLSVILITSYFVTPTMSIKCNCKRHVIKPHICR 43


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = +3

Query: 318 LFLPCSSNAFRFEGWG 365
           L + CS+  +RF+ WG
Sbjct: 544 LVMVCSAPVWRFQPWG 559


>AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropin
           releasing hormone-binding protein protein.
          Length = 332

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = +3

Query: 57  CQKEFGCRDCFRSRQNVA 110
           C K  G +  F S QN+A
Sbjct: 152 CGKNIGMKRIFTSSQNIA 169


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 198,795
Number of Sequences: 438
Number of extensions: 4723
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18337950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)