Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10k11f
         (618 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g31620.1 68417.m04492 transcriptional factor B3 family protei...    31   0.46 
At4g31615.1 68417.m04491 transcriptional factor B3 family protei...    30   1.4  
At3g61550.1 68416.m06894 zinc finger (C3HC4-type RING finger) fa...    28   4.3  
At2g11626.1 68415.m01251 hypothetical protein                          27   10.0 

>At4g31620.1 68417.m04492 transcriptional factor B3 family protein
           low similarity to reproductive meristem gene 1 from
           [Brassica oleracea var. botrytis] GI:3170424,
           [Arabidopsis thaliana] GI:13604227; contains Pfam
           profile PF02362: B3 DNA binding domain
          Length = 492

 Score = 31.5 bits (68), Expect = 0.46
 Identities = 13/33 (39%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
 Frame = +2

Query: 125 FYCLDGWVGANSSNEIRT*QMFTIDF-HGEGIT 220
           FY   GW+    +N+++T + FT++F  GEG T
Sbjct: 342 FYMAHGWIRFCEANKLKTGETFTLEFVRGEGTT 374


>At4g31615.1 68417.m04491 transcriptional factor B3 family protein
           low similarity to reproductive meristem gene 1 from
           [Brassica oleracea var. botrytis] GI:3170424,
           [Arabidopsis thaliana] GI:13604227; contains Pfam
           profile PF02362: B3 DNA binding domain
          Length = 478

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 5/61 (8%)
 Frame = +2

Query: 125 FYCLDGWVGANSSNEIRT*QMFTIDF-HGEGITS----CNKNQIRNIIICVITGGRTSCE 289
           +Y   GW    ++N ++T + FT++F  GEG T     C+K++ +   +    GG T  E
Sbjct: 331 YYLAKGWRSFCAANRLKTGETFTLEFVRGEGTTPMLKFCSKSKDKIEQVPFDEGGETQEE 390

Query: 290 S 292
           +
Sbjct: 391 T 391


>At3g61550.1 68416.m06894 zinc finger (C3HC4-type RING finger)
           family protein similar to RING-H2 zinc finger protein
           ATL6 [Arabidopsis thaliana] GI:4928403; contains Pfam
           profile PF00097: Zinc finger, C3HC4 type (RING finger)
          Length = 212

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = +2

Query: 98  PECRH*LSFFYCLDGWVGANSS 163
           PEC+H     YCLD W+  N S
Sbjct: 153 PECKH-YFHVYCLDAWLKLNGS 173


>At2g11626.1 68415.m01251 hypothetical protein
          Length = 242

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = -3

Query: 610 PLEVPRIGRKKNRVPTESSGP*NRCAHTLYAYC 512
           P+E  R+ +K   +P ++SG    C + L A+C
Sbjct: 173 PIEFTRLQKKGIMIPHQTSGYSTLCPNVLAAFC 205


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,920,103
Number of Sequences: 28952
Number of extensions: 323353
Number of successful extensions: 652
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 638
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 652
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1246162608
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)