Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10k09r
         (678 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembran...    24   1.00 
AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembran...    24   1.00 
EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggeri...    22   4.0  
EF222289-1|ABN79649.1|   68|Tribolium castaneum adipokinetic hor...    21   9.3  
AM292375-1|CAL23187.2|  311|Tribolium castaneum gustatory recept...    21   9.3  

>AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembrane
           transporter protein.
          Length = 669

 Score = 24.2 bits (50), Expect = 1.00
 Identities = 9/34 (26%), Positives = 17/34 (50%), Gaps = 4/34 (11%)
 Frame = -1

Query: 372 KWENLTL----RMQIPCPSDKHNVTKDYYLERLE 283
           +WEN+T        +PCP D H + + ++    +
Sbjct: 605 QWENVTNIQCPNADLPCPKDGHVILETFHFSEAD 638


>AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembrane
           transporter white protein.
          Length = 669

 Score = 24.2 bits (50), Expect = 1.00
 Identities = 9/34 (26%), Positives = 17/34 (50%), Gaps = 4/34 (11%)
 Frame = -1

Query: 372 KWENLTL----RMQIPCPSDKHNVTKDYYLERLE 283
           +WEN+T        +PCP D H + + ++    +
Sbjct: 605 QWENVTNIQCPNADLPCPKDGHVILETFHFSEAD 638


>EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggering
           hormone receptorisoform A protein.
          Length = 434

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 10/32 (31%), Positives = 16/32 (50%)
 Frame = +3

Query: 48  LFLFLICRLANIFALFCLGVRRLLYRQMALCL 143
           +FLF I  L  +  L+C+  + L+     L L
Sbjct: 242 IFLFFIIPLIILLILYCIIAKNLMSNAATLVL 273


>EF222289-1|ABN79649.1|   68|Tribolium castaneum adipokinetic
           hormone 2 protein.
          Length = 68

 Score = 21.0 bits (42), Expect = 9.3
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -1

Query: 195 KIIENEYLGIMDCHVF 148
           KII+NE   ++DC  F
Sbjct: 51  KIIQNEAQKLVDCEKF 66


>AM292375-1|CAL23187.2|  311|Tribolium castaneum gustatory receptor
           candidate 54 protein.
          Length = 311

 Score = 21.0 bits (42), Expect = 9.3
 Identities = 5/7 (71%), Positives = 6/7 (85%)
 Frame = +3

Query: 309 WLHYVCH 329
           WLH +CH
Sbjct: 109 WLHQICH 115


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 161,123
Number of Sequences: 336
Number of extensions: 3806
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17697850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)