Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10k09r
         (678 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6G10.12c |ace2||transcription factor Ace2|Schizosaccharomyce...    28   1.4  
SPAC12B10.07 |acp1||F-actin capping protein alpha subunit|Schizo...    27   1.9  
SPAC3H5.08c |||WD repeat protein Wdr44 family|Schizosaccharomyce...    26   4.4  
SPAC23C4.03 |||haspin related kinase|Schizosaccharomyces pombe|c...    26   4.4  
SPBC119.04 |mei3||meiosis inducing protein Mei3 |Schizosaccharom...    26   4.4  
SPBC776.02c |dis2|sds1, bws1|serine/threonine protein phosphatas...    26   4.4  
SPAC1A6.08c |mug125||sequence orphan|Schizosaccharomyces pombe|c...    26   4.4  
SPCC1223.13 |cbf12||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Ma...    26   4.4  
SPAC22G7.10 |||mRNA cleavage and polyadenylation specificity fac...    26   5.8  
SPAC1A6.06c |meu31||sequence orphan|Schizosaccharomyces pombe|ch...    26   5.8  
SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb...    25   7.6  
SPAC22G7.04 |ubp13|pan2|poly|Schizosaccharomyces pombe|chr 1|||M...    25   7.6  

>SPAC6G10.12c |ace2||transcription factor Ace2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 533

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
 Frame = +3

Query: 258 LESCKNRRPQDALNNSLWLHYVC-HSDKVFAFSELSSPISF 377
           LE    ++P  AL++S     VC H+D   AF++LSSP  +
Sbjct: 284 LEPTSPQKPSFALDSSFSHLDVCRHTDNQKAFAKLSSPAEY 324


>SPAC12B10.07 |acp1||F-actin capping protein alpha
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 256

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 12/36 (33%), Positives = 25/36 (69%), Gaps = 1/36 (2%)
 Frame = -1

Query: 447 VQLTSVNEQERNELKEMIGNYVDKMKWENLT-LRMQ 343
           V+L+S+N+++  EL+  +     K+ WEN++ +RM+
Sbjct: 219 VELSSLNDKKFKELRRQLPVTRQKINWENVSGIRMR 254


>SPAC3H5.08c |||WD repeat protein Wdr44 family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 855

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 19/54 (35%), Positives = 25/54 (46%)
 Frame = +3

Query: 321 VCHSDKVFAFSELSSPISFCRRNSRSFLLIRFFPVR*PKLIEHIRSPRMRKFSL 482
           V   D VFA  +L    +  R+NS +     FFP      +  I SP+ R FSL
Sbjct: 621 VFRQDSVFAARKLIEKKNIERKNSETLSNSSFFPQALKAHMNSISSPK-RHFSL 673


>SPAC23C4.03 |||haspin related kinase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 488

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = +3

Query: 294 LNNSLWLHYVCHSDKVFAFSELSSPISFCRRNSRSFL 404
           + N LWLHY+ H  ++     LSSP++      RS L
Sbjct: 412 ITNVLWLHYLIH--QLLHKKNLSSPLTETETLMRSRL 446


>SPBC119.04 |mei3||meiosis inducing protein Mei3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 148

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = -2

Query: 539 ATSSTKPRLLAHGTRNNTNQRKLTHSGT 456
           A  ST PR     +  NTN + + H+GT
Sbjct: 26  ARRSTSPRTSTGSSSTNTNTKTVDHAGT 53


>SPBC776.02c |dis2|sds1, bws1|serine/threonine protein phosphatase
           PP1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 327

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 16/51 (31%), Positives = 21/51 (41%)
 Frame = -3

Query: 649 TASMYSNRIIGSGSNKRVSESQRCTRQAAKL*KFSARPRLQRSPGYWHMAP 497
           +A  Y      +G+   V ES  C+ Q  K  +   R   Q S   WHM P
Sbjct: 267 SAPNYCGEFDNAGAMMSVDESLLCSFQILKPAEKKQRYGYQGSSQNWHMTP 317


>SPAC1A6.08c |mug125||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 285

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 23/77 (29%), Positives = 34/77 (44%)
 Frame = -1

Query: 480 KKTYAFGDSECVQLTSVNEQERNELKEMIGNYVDKMKWENLTLRMQIPCPSDKHNVTKDY 301
           K+T A  D+  V+L+  N      L +   NY DK+  +   +  +   PS +       
Sbjct: 207 KETLAALDN--VKLSDENAAHLGYLVKYFQNYTDKIILKETLMDWEDKEPSLQELTESTK 264

Query: 300 YLERLEGDGFYRTLNMP 250
           YLE L  D  +RT N P
Sbjct: 265 YLENL-ADTDHRTSNKP 280


>SPCC1223.13 |cbf12||CBF1/Su|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 963

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
 Frame = +3

Query: 264 SCKNRRPQDALNNSLWLHYVCHSDKVFAF--SELSSPISF 377
           S  +R P +A+N    L + CH  K F +   + SS ISF
Sbjct: 759 SLSSRAPSEAINCLSKLAFQCHETKRFLYIDEKQSSEISF 798


>SPAC22G7.10 |||mRNA cleavage and polyadenylation specificity factor
           complex subunit, Fip1 homolog |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 344

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 14/50 (28%), Positives = 22/50 (44%), Gaps = 2/50 (4%)
 Frame = -1

Query: 345 QIPCPSDKHNVTKDYYLERLEGDGFYRTLNMPPPTA--KLEFGVFRRYPI 202
           QIP P    NV      + +   GF   + +PPP    + + G  R +P+
Sbjct: 176 QIPGPLPSGNVPSPAEFQAMMASGFPPFMPIPPPIGGPQEDMGYSRNFPV 225


>SPAC1A6.06c |meu31||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 185

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 18/62 (29%), Positives = 28/62 (45%)
 Frame = +2

Query: 476 FFDLCCCGCHVPITWASLKTWPCGEFSQFCCLSCTSLTFGDAFITPAANNTIRIHRRCGD 655
           FF +C   C + I ++      C   +    +SC+  T    FI  AA+N   I + CG 
Sbjct: 84  FFSMCLRSCTI-IYFSMNPYMLCEILNARNVISCSLNTQKFFFIIVAASNVYSIFQLCGC 142

Query: 656 ML 661
           +L
Sbjct: 143 LL 144


>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 2685

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +1

Query: 163  HYTKVLILDDLQTYWVTTKDAEFQFSS 243
            H  K L+ D  + +WV T DA+ +  S
Sbjct: 1915 HLLKFLLEDSKKRFWVKTSDADREHGS 1941


>SPAC22G7.04 |ubp13|pan2|poly|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1115

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = -1

Query: 459 DSECVQLTSVNEQERNELKEMIGNYVDKM 373
           DS+C+   ++  Q RN  + +IG Y  K+
Sbjct: 123 DSDCIDYRAMFYQSRNNPEVVIGGYHQKL 151


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,820,653
Number of Sequences: 5004
Number of extensions: 61506
Number of successful extensions: 190
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 187
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 190
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 311890690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)