Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10k09r
(678 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_06_0018 - 9674771-9674995,9675079-9675126,9675471-9675530,967... 35 0.069
08_02_0431 + 17053928-17054189,17054296-17054564,17054661-170548... 33 0.28
02_01_0228 + 1507314-1507566,1507645-1507913,1508010-1508213,150... 33 0.28
07_01_0794 - 6179424-6179714,6179797-6179844,6180189-6180248,618... 31 0.64
04_01_0097 - 998766-999383,999479-999861,1000021-1000398,1000486... 30 2.0
03_02_0344 - 7654551-7656149 29 2.6
02_03_0172 + 15965342-15965711,15967757-15967849,15967976-159680... 28 6.0
>10_06_0018 -
9674771-9674995,9675079-9675126,9675471-9675530,
9675693-9675758,9675844-9675906,9675985-9676032,
9676150-9676215,9676493-9676558,9676660-9676725,
9676822-9676887,9676975-9677058,9677310-9677654,
9677738-9677833,9678129-9678332,9678434-9678726,
9678833-9678958,9679217-9679226
Length = 643
Score = 34.7 bits (76), Expect = 0.069
Identities = 17/67 (25%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
Frame = -1
Query: 576 HDKQQNCENSPQGHVFNEAQVIGTWHPQQHKSKKTYAFGD-SECVQLTSVNEQERNELKE 400
H +Q+N + Q HV +E + T H HK+K+T+ D + +++ +Q+ N++
Sbjct: 503 HVEQENIVMNSQSHVQDEDKTPPTKHATAHKNKRTFGLNDHGKQMEIICAKKQQCNKMDF 562
Query: 399 MIGNYVD 379
+ N ++
Sbjct: 563 ITDNSME 569
>08_02_0431 +
17053928-17054189,17054296-17054564,17054661-17054864,
17054974-17055066,17055160-17055255,17055339-17055683,
17055935-17056018,17056106-17056171,17056268-17056333,
17056436-17056501,17056635-17056700,17056798-17056863,
17056981-17057028,17057107-17057169,17057255-17057320,
17057483-17057542,17057888-17057935,17058019-17058255,
17058346-17058366
Length = 741
Score = 32.7 bits (71), Expect = 0.28
Identities = 16/67 (23%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
Frame = -1
Query: 576 HDKQQNCENSPQGHVFNEAQVIGTWHPQQHKSKKTYAFGD-SECVQLTSVNEQERNELKE 400
H +Q+N + Q HV +E + T H HK+K+T+ D + +++ +Q+ +++
Sbjct: 590 HVEQENIVMNSQSHVQDEDKTPPTKHATAHKNKRTFGLNDHGKQMEIICAKKQQCSKMDF 649
Query: 399 MIGNYVD 379
+ N ++
Sbjct: 650 ITDNSME 656
>02_01_0228 +
1507314-1507566,1507645-1507913,1508010-1508213,
1508323-1508415,1508509-1508604,1508688-1509032,
1509123-1509191,1509284-1509367,1509455-1509520,
1509735-1509800,1509934-1509999,1510097-1510162,
1510280-1510327,1510406-1510468,1510554-1510619,
1510782-1510841,1511185-1511232,1511315-1511605
Length = 750
Score = 32.7 bits (71), Expect = 0.28
Identities = 16/67 (23%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
Frame = -1
Query: 576 HDKQQNCENSPQGHVFNEAQVIGTWHPQQHKSKKTYAFGD-SECVQLTSVNEQERNELKE 400
H +Q+N + Q H +E + T H HK+K+T+ D + +++ EQ+ +++
Sbjct: 588 HVEQENIVMNSQSHAQDEDKTPPTKHATAHKNKRTFGLNDHGKQMEIICAKEQQCSKMDF 647
Query: 399 MIGNYVD 379
+ N ++
Sbjct: 648 ITDNSME 654
>07_01_0794 -
6179424-6179714,6179797-6179844,6180189-6180248,
6180411-6180476,6180562-6180624,6180703-6180750,
6180868-6180933,6181031-6181096,6181230-6181295,
6181510-6181575,6181663-6181746,6181839-6181907,
6181998-6182342,6182426-6182521,6182615-6182707,
6182817-6183020,6183117-6183385,6183492-6183753
Length = 753
Score = 31.5 bits (68), Expect = 0.64
Identities = 22/97 (22%), Positives = 44/97 (45%), Gaps = 5/97 (5%)
Frame = -1
Query: 654 SPQRRCILIVLLAAG----VINASPKVNDVHDKQQNCENSPQGHVFNEAQVIGTWHPQQH 487
S +R+C I L V P H +Q+N + Q H +E + T H H
Sbjct: 561 SKKRQCNTIDFLTDNSTVKVYGDGPLQEICHVEQENIVMNSQSHAQDEDKTPPTKHATAH 620
Query: 486 KSKKTYAFGD-SECVQLTSVNEQERNELKEMIGNYVD 379
K+K+T+ D + +++ +Q+ +++ + N ++
Sbjct: 621 KNKRTFGLNDHGKQMEIICAKKQQCSKMDFITDNSME 657
>04_01_0097 -
998766-999383,999479-999861,1000021-1000398,
1000486-1000711,1000799-1001323,1003032-1003164,
1004353-1004435,1004645-1005349,1005483-1005556,
1006290-1006392,1006485-1006727
Length = 1156
Score = 29.9 bits (64), Expect = 2.0
Identities = 20/87 (22%), Positives = 36/87 (41%)
Frame = -1
Query: 630 IVLLAAGVINASPKVNDVHDKQQNCENSPQGHVFNEAQVIGTWHPQQHKSKKTYAFGDSE 451
I LAA K+ +V + EN+ H+ + + +H K + + E
Sbjct: 129 IAALAAENYELKEKLKEVERHAELAENTVDHHIHSPRDLRAELKKLKHAYKTLSSEKEKE 188
Query: 450 CVQLTSVNEQERNELKEMIGNYVDKMK 370
L + N+ N+L+ M +Y D +K
Sbjct: 189 VSALRAENDFVWNQLRTMENDYTDLLK 215
>03_02_0344 - 7654551-7656149
Length = 532
Score = 29.5 bits (63), Expect = 2.6
Identities = 14/35 (40%), Positives = 21/35 (60%)
Frame = +1
Query: 493 LRVPCANNLGFVEDVALRRIFTVLLLVVYIVDFRR 597
L +P L F++ + +RR+F V + YI DFRR
Sbjct: 381 LVLPLTEQLKFLKSLMMRRVFRVKGVRPYIPDFRR 415
>02_03_0172 +
15965342-15965711,15967757-15967849,15967976-15968060,
15968749-15968824,15968992-15969120,15969473-15969571,
15969661-15969762,15970257-15970415,15970507-15970602,
15971497-15971647,15971782-15971893,15972004-15972074,
15972548-15972984,15973421-15973492,15973713-15973810,
15974350-15974425,15975512-15975634,15975776-15975844
Length = 805
Score = 28.3 bits (60), Expect = 6.0
Identities = 14/45 (31%), Positives = 25/45 (55%)
Frame = -2
Query: 584 TMYTTSSKTVKILRKATSSTKPRLLAHGTRNNTNQRKLTHSGTPN 450
++ TT+ +TV+ ++ T+P L HG + +N SGTP+
Sbjct: 578 SLRTTAQQTVEKTKRTLRYTRP--LLHGLSHTSNDSDAQTSGTPS 620
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,909,869
Number of Sequences: 37544
Number of extensions: 387220
Number of successful extensions: 977
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 951
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 977
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1726796312
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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