Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10k09r
(678 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AE014134-2678|AAF53505.2| 2190|Drosophila melanogaster CG12455-P... 31 1.9
AY118502-1|AAM49871.1| 529|Drosophila melanogaster LD09783p pro... 29 4.4
AE014134-908|AAF52239.3| 2267|Drosophila melanogaster CG14023-PA... 29 4.4
DQ138908-1|ABA86514.1| 1412|Drosophila melanogaster CG11156 prot... 29 5.8
BT010007-1|AAQ22476.1| 1425|Drosophila melanogaster RE28166p pro... 29 5.8
AF257463-1|AAG27544.1| 1425|Drosophila melanogaster BRCT-domain ... 29 5.8
AE014298-1949|AAF48306.1| 1425|Drosophila melanogaster CG11156-P... 29 5.8
AE013599-875|AAF58928.1| 396|Drosophila melanogaster CG12931-PA... 29 5.8
AY058441-1|AAL13670.1| 459|Drosophila melanogaster GH22016p pro... 29 7.7
AE014134-3238|AAF53891.1| 459|Drosophila melanogaster CG10949-P... 29 7.7
>AE014134-2678|AAF53505.2| 2190|Drosophila melanogaster CG12455-PA,
isoform A protein.
Length = 2190
Score = 30.7 bits (66), Expect = 1.9
Identities = 17/55 (30%), Positives = 30/55 (54%)
Frame = -2
Query: 593 RKSTMYTTSSKTVKILRKATSSTKPRLLAHGTRNNTNQRKLTHSGTPNVFN*LRS 429
+ +T+++T+ T+ ++ S+T P A T + N +HS TP+ N LRS
Sbjct: 1978 QNNTIFSTTYSTIFSTTQSISTTSPTQYAL-TSSTPNTSTTSHSSTPSSINNLRS 2031
>AY118502-1|AAM49871.1| 529|Drosophila melanogaster LD09783p
protein.
Length = 529
Score = 29.5 bits (63), Expect = 4.4
Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 4/44 (9%)
Frame = -2
Query: 569 SSKTVKILRKATSSTKPRLLA----HGTRNNTNQRKLTHSGTPN 450
+S TVK L +A+S+ PR++ H NN +R+ + G+ N
Sbjct: 203 ASTTVKSLSRASSTASPRVVTPTPNHNNNNNKRRRQESECGSSN 246
>AE014134-908|AAF52239.3| 2267|Drosophila melanogaster CG14023-PA
protein.
Length = 2267
Score = 29.5 bits (63), Expect = 4.4
Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 4/44 (9%)
Frame = -2
Query: 569 SSKTVKILRKATSSTKPRLLA----HGTRNNTNQRKLTHSGTPN 450
+S TVK L +A+S+ PR++ H NN +R+ + G+ N
Sbjct: 1941 ASTTVKSLSRASSTASPRVVTPTPNHNNNNNKRRRQESECGSSN 1984
>DQ138908-1|ABA86514.1| 1412|Drosophila melanogaster CG11156
protein.
Length = 1412
Score = 29.1 bits (62), Expect = 5.8
Identities = 16/45 (35%), Positives = 24/45 (53%)
Frame = -1
Query: 528 NEAQVIGTWHPQQHKSKKTYAFGDSECVQLTSVNEQERNELKEMI 394
N QV+ P+Q +KK AF D CV L+ +ER +L ++
Sbjct: 371 NYQQVLAEIEPRQ--AKKAGAFLDGCCVYLSGFRSEEREKLNRVL 413
>BT010007-1|AAQ22476.1| 1425|Drosophila melanogaster RE28166p
protein.
Length = 1425
Score = 29.1 bits (62), Expect = 5.8
Identities = 16/45 (35%), Positives = 24/45 (53%)
Frame = -1
Query: 528 NEAQVIGTWHPQQHKSKKTYAFGDSECVQLTSVNEQERNELKEMI 394
N QV+ P+Q +KK AF D CV L+ +ER +L ++
Sbjct: 378 NYQQVLAEIEPRQ--AKKAGAFLDGCCVYLSGFRSEEREKLNRVL 420
>AF257463-1|AAG27544.1| 1425|Drosophila melanogaster BRCT-domain
protein MUS101 protein.
Length = 1425
Score = 29.1 bits (62), Expect = 5.8
Identities = 16/45 (35%), Positives = 24/45 (53%)
Frame = -1
Query: 528 NEAQVIGTWHPQQHKSKKTYAFGDSECVQLTSVNEQERNELKEMI 394
N QV+ P+Q +KK AF D CV L+ +ER +L ++
Sbjct: 378 NYQQVLAEIEPRQ--AKKAGAFLDGCCVYLSGFRSEEREKLNRVL 420
>AE014298-1949|AAF48306.1| 1425|Drosophila melanogaster CG11156-PA
protein.
Length = 1425
Score = 29.1 bits (62), Expect = 5.8
Identities = 16/45 (35%), Positives = 24/45 (53%)
Frame = -1
Query: 528 NEAQVIGTWHPQQHKSKKTYAFGDSECVQLTSVNEQERNELKEMI 394
N QV+ P+Q +KK AF D CV L+ +ER +L ++
Sbjct: 378 NYQQVLAEIEPRQ--AKKAGAFLDGCCVYLSGFRSEEREKLNRVL 420
>AE013599-875|AAF58928.1| 396|Drosophila melanogaster CG12931-PA
protein.
Length = 396
Score = 29.1 bits (62), Expect = 5.8
Identities = 11/33 (33%), Positives = 15/33 (45%)
Frame = +2
Query: 491 CCGCHVPITWASLKTWPCGEFSQFCCLSCTSLT 589
CC W+ L+T P FC L+C+ T
Sbjct: 53 CCQAEFVFGWSHLRTSPVDAMDAFCPLACSFTT 85
>AY058441-1|AAL13670.1| 459|Drosophila melanogaster GH22016p
protein.
Length = 459
Score = 28.7 bits (61), Expect = 7.7
Identities = 20/72 (27%), Positives = 34/72 (47%), Gaps = 3/72 (4%)
Frame = -3
Query: 553 KFSARPRLQRSPGYWHMAPATTQIKENLR---IRGLRMCSINFGQRTGKKRIKRNDRELR 383
+F RP P YW M P +K++ + R + + F R KKR K + + R
Sbjct: 66 RFQERPD---EPTYWDMFPRLLFLKDHYKQGLARNESLDGMRFEPRERKKRTKVDMEQER 122
Query: 382 RQNEMGELNSEN 347
R+ + E +S++
Sbjct: 123 RRKDEEEEDSQD 134
>AE014134-3238|AAF53891.1| 459|Drosophila melanogaster CG10949-PA
protein.
Length = 459
Score = 28.7 bits (61), Expect = 7.7
Identities = 20/72 (27%), Positives = 34/72 (47%), Gaps = 3/72 (4%)
Frame = -3
Query: 553 KFSARPRLQRSPGYWHMAPATTQIKENLR---IRGLRMCSINFGQRTGKKRIKRNDRELR 383
+F RP P YW M P +K++ + R + + F R KKR K + + R
Sbjct: 66 RFQERPD---EPTYWDMFPRLLFLKDHYKQGLARNESLDGMRFEPRERKKRTKVDMEQER 122
Query: 382 RQNEMGELNSEN 347
R+ + E +S++
Sbjct: 123 RRKDEEEEDSQD 134
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 30,470,241
Number of Sequences: 53049
Number of extensions: 678796
Number of successful extensions: 1755
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1707
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1755
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2951284050
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -