BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= fner10k09r (678 letters) Database: celegans 27,780 sequences; 12,740,198 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Z49967-7|CAA90257.1| 740|Caenorhabditis elegans Hypothetical pr... 35 0.061 Z81594-6|CAJ85771.1| 153|Caenorhabditis elegans Hypothetical pr... 31 0.76 Z81594-5|CAJ85770.1| 262|Caenorhabditis elegans Hypothetical pr... 31 0.76 Z81594-4|CAB04747.1| 282|Caenorhabditis elegans Hypothetical pr... 31 0.76 U40952-2|AAA81737.1| 818|Caenorhabditis elegans Hypothetical pr... 31 1.00 Z81085-2|CAB03114.2| 618|Caenorhabditis elegans Hypothetical pr... 30 1.7 Z99942-1|CAB17068.2| 454|Caenorhabditis elegans Hypothetical pr... 29 3.0 AF067609-5|AAC17534.1| 644|Caenorhabditis elegans Hypothetical ... 29 3.0 Z22180-7|CAE17863.1| 372|Caenorhabditis elegans Hypothetical pr... 29 4.0 Z68220-10|CAA92491.2| 1843|Caenorhabditis elegans Hypothetical p... 28 7.0 U64860-1|AAB04991.1| 155|Caenorhabditis elegans Hypothetical pr... 28 7.0 U50310-4|ABB51170.1| 409|Caenorhabditis elegans Hypothetical pr... 28 7.0 U50310-3|AAA92540.4| 411|Caenorhabditis elegans Hypothetical pr... 28 7.0 Z73898-9|CAA98066.2| 913|Caenorhabditis elegans Hypothetical pr... 27 9.3 Z68159-10|CAD30432.1| 826|Caenorhabditis elegans Hypothetical p... 27 9.3 Z68159-9|CAA92282.2| 844|Caenorhabditis elegans Hypothetical pr... 27 9.3 U97006-1|AAC47965.1| 2076|Caenorhabditis elegans Hypothetical pr... 27 9.3 U70852-10|AAO91718.1| 505|Caenorhabditis elegans Hypothetical p... 27 9.3 U70852-9|ABB51183.1| 784|Caenorhabditis elegans Hypothetical pr... 27 9.3 U70852-8|ABB51182.1| 868|Caenorhabditis elegans Hypothetical pr... 27 9.3 U23486-4|AAC46776.2| 261|Caenorhabditis elegans Hypothetical pr... 27 9.3 U21310-5|AAY86191.1| 148|Caenorhabditis elegans Hypothetical pr... 27 9.3 AF339059-1|AAL50361.1| 826|Caenorhabditis elegans Rho guanine n... 27 9.3 AF326352-1|AAL50355.1| 844|Caenorhabditis elegans putative Rho ... 27 9.3 AB060647-1|BAB43906.1| 826|Caenorhabditis elegans putative GDP-... 27 9.3 >Z49967-7|CAA90257.1| 740|Caenorhabditis elegans Hypothetical protein F54C9.9 protein. Length = 740 Score = 34.7 bits (76), Expect = 0.061 Identities = 17/39 (43%), Positives = 25/39 (64%) Frame = -3 Query: 454 RMCSINFGQRTGKKRIKRNDRELRRQNEMGELNSENANT 338 R+ SI+FG GKK +KR + + + EM E+N +N NT Sbjct: 594 RILSIDFG---GKKSLKRKMEDEQMEKEMAEMNDQNDNT 629 >Z81594-6|CAJ85771.1| 153|Caenorhabditis elegans Hypothetical protein T20F10.2c protein. Length = 153 Score = 31.1 bits (67), Expect = 0.76 Identities = 19/67 (28%), Positives = 31/67 (46%) Frame = -1 Query: 618 AAGVINASPKVNDVHDKQQNCENSPQGHVFNEAQVIGTWHPQQHKSKKTYAFGDSECVQL 439 AA + N +PK+ DKQ +N+ + H E +V T QH ++ D++ Sbjct: 53 AAHLNNLTPKIEKPKDKQAEEQNAEEQH--KEKEVTVTTVTTQHSREEAQVKEDNQAQST 110 Query: 438 TSVNEQE 418 T+V E Sbjct: 111 TTVTSTE 117 >Z81594-5|CAJ85770.1| 262|Caenorhabditis elegans Hypothetical protein T20F10.2b protein. Length = 262 Score = 31.1 bits (67), Expect = 0.76 Identities = 19/67 (28%), Positives = 31/67 (46%) Frame = -1 Query: 618 AAGVINASPKVNDVHDKQQNCENSPQGHVFNEAQVIGTWHPQQHKSKKTYAFGDSECVQL 439 AA + N +PK+ DKQ +N+ + H E +V T QH ++ D++ Sbjct: 162 AAHLNNLTPKIEKPKDKQAEEQNAEEQH--KEKEVTVTTVTTQHSREEAQVKEDNQAQST 219 Query: 438 TSVNEQE 418 T+V E Sbjct: 220 TTVTSTE 226 >Z81594-4|CAB04747.1| 282|Caenorhabditis elegans Hypothetical protein T20F10.2a protein. Length = 282 Score = 31.1 bits (67), Expect = 0.76 Identities = 19/67 (28%), Positives = 31/67 (46%) Frame = -1 Query: 618 AAGVINASPKVNDVHDKQQNCENSPQGHVFNEAQVIGTWHPQQHKSKKTYAFGDSECVQL 439 AA + N +PK+ DKQ +N+ + H E +V T QH ++ D++ Sbjct: 182 AAHLNNLTPKIEKPKDKQAEEQNAEEQH--KEKEVTVTTVTTQHSREEAQVKEDNQAQST 239 Query: 438 TSVNEQE 418 T+V E Sbjct: 240 TTVTSTE 246 >U40952-2|AAA81737.1| 818|Caenorhabditis elegans Hypothetical protein C03B1.7 protein. Length = 818 Score = 30.7 bits (66), Expect = 1.00 Identities = 18/76 (23%), Positives = 36/76 (47%), Gaps = 1/76 (1%) Frame = -1 Query: 531 FNEAQVIGTWHP-QQHKSKKTYAFGDSECVQLTSVNEQERNELKEMIGNYVDKMKWENLT 355 F E ++ +P Q + + F S+C S + + +K+ + N++D KWEN+ Sbjct: 23 FEETYLLKRVNPFAQTEEGRIIKFNSSDCPCGKSQDVHNISAMKDQLSNFLD--KWENVH 80 Query: 354 LRMQIPCPSDKHNVTK 307 + +P S + +K Sbjct: 81 EKFSLPTGSSELTTSK 96 >Z81085-2|CAB03114.2| 618|Caenorhabditis elegans Hypothetical protein F46F3.2 protein. Length = 618 Score = 29.9 bits (64), Expect = 1.7 Identities = 32/110 (29%), Positives = 52/110 (47%), Gaps = 6/110 (5%) Frame = -1 Query: 477 KTYAFGDSECVQLTSVNEQERNELKEMIGNYVDKMKW---ENLTLRMQIPCPS---DKHN 316 +TY + D E +L N +E E IG +D++ + +++ + M C S D+ Sbjct: 137 QTYNYSDPEVQELVLNNYEEAQE--NAIG--IDQLLFLDHQSVMIVMPAACNSSNSDEKE 192 Query: 315 VTKDYYLERLEGDGFYRTLNMPPPTAKLEFGVFRRYPIRLKIIENEYLGI 166 ++K YYLE+ GD + N+ KL V P L I N+ LG+ Sbjct: 193 ISKQYYLEKY-GDFSFNVSNLNIELDKLHEMVHDFKP--LDQIMNQNLGL 239 >Z99942-1|CAB17068.2| 454|Caenorhabditis elegans Hypothetical protein H13N06.2 protein. Length = 454 Score = 29.1 bits (62), Expect = 3.0 Identities = 21/96 (21%), Positives = 44/96 (45%), Gaps = 4/96 (4%) Frame = -1 Query: 669 SDVNMSPQRRCILIVLLAAGVINASPKVNDVHDKQQ----NCENSPQGHVFNEAQVIGTW 502 ++ NM ++ ++ + + V K++++ D ++ N ENS +G NE +++ T Sbjct: 148 TETNMKTEKPDKGVLKILSPVFEDITKIDNISDSEEVLRVNSENSVEGSGDNEPELMTTL 207 Query: 501 HPQQHKSKKTYAFGDSECVQLTSVNEQERNELKEMI 394 SKK+ F + + +SV + E I Sbjct: 208 ETTTTSSKKSSEFTTTMTPESSSVTTTTAKPVTEPI 243 >AF067609-5|AAC17534.1| 644|Caenorhabditis elegans Hypothetical protein C23H5.7 protein. Length = 644 Score = 29.1 bits (62), Expect = 3.0 Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 1/61 (1%) Frame = -1 Query: 522 AQVIGTWHPQQHK-SKKTYAFGDSECVQLTSVNEQERNELKEMIGNYVDKMKWENLTLRM 346 A +IG+W P QHK S K+ G V S Q NE ++M+ MK+ + + Sbjct: 317 ATIIGSWLPTQHKNSPKSEISGVGSVVTQMS---QTVNEFRQMMDGIKFYMKYREVNSAI 373 Query: 345 Q 343 Q Sbjct: 374 Q 374 >Z22180-7|CAE17863.1| 372|Caenorhabditis elegans Hypothetical protein K11H3.7 protein. Length = 372 Score = 28.7 bits (61), Expect = 4.0 Identities = 12/31 (38%), Positives = 18/31 (58%) Frame = +2 Query: 536 WPCGEFSQFCCLSCTSLTFGDAFITPAANNT 628 W E FC +S T++ FGD F + + +NT Sbjct: 291 WTFLESFYFCFISLTTIGFGDKFPSTSVSNT 321 >Z68220-10|CAA92491.2| 1843|Caenorhabditis elegans Hypothetical protein T20D3.11 protein. Length = 1843 Score = 27.9 bits (59), Expect = 7.0 Identities = 10/21 (47%), Positives = 15/21 (71%) Frame = -1 Query: 369 WENLTLRMQIPCPSDKHNVTK 307 WE L LR +P P+D++ +TK Sbjct: 123 WEQLLLRKLLPSPADRNMLTK 143 >U64860-1|AAB04991.1| 155|Caenorhabditis elegans Hypothetical protein R106.1 protein. Length = 155 Score = 27.9 bits (59), Expect = 7.0 Identities = 14/34 (41%), Positives = 15/34 (44%), Gaps = 1/34 (2%) Frame = +2 Query: 482 DLCCCGCHVPITWASLKTWPCGE-FSQFCCLSCT 580 D CCCG H P A L F F CL C+ Sbjct: 53 DQCCCGDHAPSLSAMLPVLISRHIFYTFLCLLCS 86 >U50310-4|ABB51170.1| 409|Caenorhabditis elegans Hypothetical protein ZC487.1b protein. Length = 409 Score = 27.9 bits (59), Expect = 7.0 Identities = 12/26 (46%), Positives = 17/26 (65%), Gaps = 1/26 (3%) Frame = -1 Query: 369 WENLTLRMQI-PCPSDKHNVTKDYYL 295 WE +TL Q+ P P D N+ K+Y+L Sbjct: 278 WEVMTLTAQLGPQPEDVDNIDKNYHL 303 >U50310-3|AAA92540.4| 411|Caenorhabditis elegans Hypothetical protein ZC487.1a protein. Length = 411 Score = 27.9 bits (59), Expect = 7.0 Identities = 12/26 (46%), Positives = 17/26 (65%), Gaps = 1/26 (3%) Frame = -1 Query: 369 WENLTLRMQI-PCPSDKHNVTKDYYL 295 WE +TL Q+ P P D N+ K+Y+L Sbjct: 280 WEVMTLTAQLGPQPEDVDNIDKNYHL 305 >Z73898-9|CAA98066.2| 913|Caenorhabditis elegans Hypothetical protein ZK822.1 protein. Length = 913 Score = 27.5 bits (58), Expect = 9.3 Identities = 12/24 (50%), Positives = 16/24 (66%) Frame = -1 Query: 345 QIPCPSDKHNVTKDYYLERLEGDG 274 +IP PS +H K +LERL+G G Sbjct: 888 RIPTPSSRHGNEKRGWLERLKGIG 911 >Z68159-10|CAD30432.1| 826|Caenorhabditis elegans Hypothetical protein C33D9.1b protein. Length = 826 Score = 27.5 bits (58), Expect = 9.3 Identities = 11/36 (30%), Positives = 22/36 (61%) Frame = -1 Query: 462 GDSECVQLTSVNEQERNELKEMIGNYVDKMKWENLT 355 G CV+L + ++E+N+ + I + +D+ K +LT Sbjct: 586 GPKRCVELFTPTQKEKNDWVDSIFSIIDEAKAHSLT 621 >Z68159-9|CAA92282.2| 844|Caenorhabditis elegans Hypothetical protein C33D9.1a protein. Length = 844 Score = 27.5 bits (58), Expect = 9.3 Identities = 11/36 (30%), Positives = 22/36 (61%) Frame = -1 Query: 462 GDSECVQLTSVNEQERNELKEMIGNYVDKMKWENLT 355 G CV+L + ++E+N+ + I + +D+ K +LT Sbjct: 586 GPKRCVELFTPTQKEKNDWVDSIFSIIDEAKAHSLT 621 >U97006-1|AAC47965.1| 2076|Caenorhabditis elegans Hypothetical protein C13F10.4 protein. Length = 2076 Score = 27.5 bits (58), Expect = 9.3 Identities = 15/50 (30%), Positives = 22/50 (44%), Gaps = 2/50 (4%) Frame = +2 Query: 533 TWPCGEFSQFCCLSCTSLTFGDAFITPAANN--TIRIHRRCGDMLTSERN 676 TWP + CL+ LT+G F P NN ++I D + +N Sbjct: 787 TWPENDSEPLTCLNTALLTYGKVF--PLVNNKHKVQITEHFWDTIQKSKN 834 >U70852-10|AAO91718.1| 505|Caenorhabditis elegans Hypothetical protein F45E4.7b protein. Length = 505 Score = 27.5 bits (58), Expect = 9.3 Identities = 22/89 (24%), Positives = 33/89 (37%) Frame = -1 Query: 534 VFNEAQVIGTWHPQQHKSKKTYAFGDSECVQLTSVNEQERNELKEMIGNYVDKMKWENLT 355 V N + W+ +Q+ +G ECV S E R + +D K + Sbjct: 173 VANYLLTVTVWNLKQYSYSPRDQYGWRECVDQISSFEIGRKMYVDKASQTIDLPKIQEFL 232 Query: 354 LRMQIPCPSDKHNVTKDYYLERLEGDGFY 268 ++I S H T YL + GFY Sbjct: 233 QNLKIDFLS-VHRSTPLQYLSNINRLGFY 260 >U70852-9|ABB51183.1| 784|Caenorhabditis elegans Hypothetical protein F45E4.7c protein. Length = 784 Score = 27.5 bits (58), Expect = 9.3 Identities = 22/89 (24%), Positives = 33/89 (37%) Frame = -1 Query: 534 VFNEAQVIGTWHPQQHKSKKTYAFGDSECVQLTSVNEQERNELKEMIGNYVDKMKWENLT 355 V N + W+ +Q+ +G ECV S E R + +D K + Sbjct: 452 VANYLLTVTVWNLKQYSYSPRDQYGWRECVDQISSFEIGRKMYVDKASQTIDLPKIQEFL 511 Query: 354 LRMQIPCPSDKHNVTKDYYLERLEGDGFY 268 ++I S H T YL + GFY Sbjct: 512 QNLKIDFLS-VHRSTPLQYLSNINRLGFY 539 >U70852-8|ABB51182.1| 868|Caenorhabditis elegans Hypothetical protein F45E4.7a protein. Length = 868 Score = 27.5 bits (58), Expect = 9.3 Identities = 22/89 (24%), Positives = 33/89 (37%) Frame = -1 Query: 534 VFNEAQVIGTWHPQQHKSKKTYAFGDSECVQLTSVNEQERNELKEMIGNYVDKMKWENLT 355 V N + W+ +Q+ +G ECV S E R + +D K + Sbjct: 536 VANYLLTVTVWNLKQYSYSPRDQYGWRECVDQISSFEIGRKMYVDKASQTIDLPKIQEFL 595 Query: 354 LRMQIPCPSDKHNVTKDYYLERLEGDGFY 268 ++I S H T YL + GFY Sbjct: 596 QNLKIDFLS-VHRSTPLQYLSNINRLGFY 623 >U23486-4|AAC46776.2| 261|Caenorhabditis elegans Hypothetical protein F07F6.2 protein. Length = 261 Score = 27.5 bits (58), Expect = 9.3 Identities = 18/80 (22%), Positives = 35/80 (43%), Gaps = 3/80 (3%) Frame = -3 Query: 601 RVSESQRCTRQAAKL*KFSARPRLQRSPGYWHMAPATTQIKENLRIRGLRMCSINFGQRT 422 R+ + RQ K + + R + WH+ A +K + GL+ + F ++ Sbjct: 156 RIPSKEEVDRQTLKFKEEARRIKRLMIEEDWHVKEANEDVKNKIEQEGLKRKDMEFEEQL 215 Query: 421 GKKRI---KRNDRELRRQNE 371 RI KR ++ L+++ E Sbjct: 216 YHLRIEKVKRREQVLKQKLE 235 >U21310-5|AAY86191.1| 148|Caenorhabditis elegans Hypothetical protein F40H6.6 protein. Length = 148 Score = 27.5 bits (58), Expect = 9.3 Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 4/50 (8%) Frame = -1 Query: 594 PKVNDVHD----KQQNCENSPQGHVFNEAQVIGTWHPQQHKSKKTYAFGD 457 PK+ND+ D K +NCE+ + QV GT P+ + GD Sbjct: 22 PKMNDIIDWKTWKTRNCESRRNPSFYRHRQVAGTVAPKAPLIHHNHHTGD 71 >AF339059-1|AAL50361.1| 826|Caenorhabditis elegans Rho guanine nucleotide exchangefactor FGD-1 protein. Length = 826 Score = 27.5 bits (58), Expect = 9.3 Identities = 11/36 (30%), Positives = 22/36 (61%) Frame = -1 Query: 462 GDSECVQLTSVNEQERNELKEMIGNYVDKMKWENLT 355 G CV+L + ++E+N+ + I + +D+ K +LT Sbjct: 586 GPKRCVELFTPTQKEKNDWVDSIFSIIDEAKAHSLT 621 >AF326352-1|AAL50355.1| 844|Caenorhabditis elegans putative Rho guanine nucleotideexchange factor FGD-1 protein. Length = 844 Score = 27.5 bits (58), Expect = 9.3 Identities = 11/36 (30%), Positives = 22/36 (61%) Frame = -1 Query: 462 GDSECVQLTSVNEQERNELKEMIGNYVDKMKWENLT 355 G CV+L + ++E+N+ + I + +D+ K +LT Sbjct: 586 GPKRCVELFTPTQKEKNDWVDSIFSIIDEAKAHSLT 621 >AB060647-1|BAB43906.1| 826|Caenorhabditis elegans putative GDP-GTP exchange factor protein. Length = 826 Score = 27.5 bits (58), Expect = 9.3 Identities = 11/36 (30%), Positives = 22/36 (61%) Frame = -1 Query: 462 GDSECVQLTSVNEQERNELKEMIGNYVDKMKWENLT 355 G CV+L + ++E+N+ + I + +D+ K +LT Sbjct: 586 GPKRCVELFTPTQKEKNDWVDSIFSIIDEAKAHSLT 621 Database: celegans Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 12,740,198 Number of sequences in database: 27,780 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 15,743,856 Number of Sequences: 27780 Number of extensions: 352886 Number of successful extensions: 1069 Number of sequences better than 10.0: 25 Number of HSP's better than 10.0 without gapping: 1017 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1069 length of database: 12,740,198 effective HSP length: 79 effective length of database: 10,545,578 effective search space used: 1539654388 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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