Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10k09r
         (678 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    24   1.2  
DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    22   4.7  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    22   6.2  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    22   6.2  

>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 18/67 (26%), Positives = 30/67 (44%)
 Frame = +3

Query: 294 LNNSLWLHYVCHSDKVFAFSELSSPISFCRRNSRSFLLIRFFPVR*PKLIEHIRSPRMRK 473
           L  S  + YV   ++V+    L    +       S  + +  PVR   L  ++ S  MR 
Sbjct: 220 LRLSRLVRYVSQWEEVYILQNLQKKRTRAEGRLSSDNMSKKSPVRKATLFLNMASVFMRI 279

Query: 474 FSLICVV 494
           F+LIC++
Sbjct: 280 FNLICMM 286


>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = +2

Query: 593 GDAFITPAANNTIRIHRRCG 652
           G  +ITP     ++IH  CG
Sbjct: 311 GYKYITPLIQKHLKIHDTCG 330


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 6/18 (33%), Positives = 13/18 (72%)
 Frame = +3

Query: 48  LFLFLICRLANIFALFCL 101
           LF+ ++C ++ +  LFC+
Sbjct: 417 LFIAIVCFVSYLIGLFCI 434


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 6/18 (33%), Positives = 13/18 (72%)
 Frame = +3

Query: 48  LFLFLICRLANIFALFCL 101
           LF+ ++C ++ +  LFC+
Sbjct: 470 LFIAIVCFVSYLIGLFCI 487


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 193,609
Number of Sequences: 438
Number of extensions: 4664
Number of successful extensions: 11
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20586735
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)