Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10k09r
         (678 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g52800.1 68418.m06552 expressed protein ; expression supporte...    30   1.2  
At1g08260.1 68414.m00911 DNA-directed DNA polymerase epsilon cat...    29   2.8  
At3g43520.1 68416.m04614 expressed protein contains Pfam profile...    29   3.7  
At5g20380.1 68418.m02424 transporter-related low similarity to v...    28   6.5  
At1g50500.1 68414.m05664 membrane trafficking VPS53 family prote...    28   6.5  
At3g27470.1 68416.m03433 expressed protein contains Pfam profile...    27   8.6  
At1g53345.1 68414.m06047 expressed protein                             27   8.6  
At1g12760.1 68414.m01481 zinc finger (C3HC4-type RING finger) fa...    27   8.6  

>At5g52800.1 68418.m06552 expressed protein ; expression supported
           by MPSS
          Length = 618

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 10/23 (43%), Positives = 17/23 (73%)
 Frame = +1

Query: 550 IFTVLLLVVYIVDFRRRVYYSRC 618
           I+ + + ++YIVD RR +YY +C
Sbjct: 482 IYDIRVSMMYIVDLRRGIYYQKC 504


>At1g08260.1 68414.m00911 DNA-directed DNA polymerase epsilon
            catalytic subunit, putative similar to SP|Q07864 DNA
            polymerase epsilon, catalytic subunit A (EC 2.7.7.7) (DNA
            polymerase II subunit A) {Homo sapiens}; contains Pfam
            profiles: PF03175 DNA polymerase type B, organellar and
            viral, PF00136 DNA polymerase family B, PF03104 DNA
            polymerase family B, exonuclease domain
          Length = 2271

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 15/78 (19%), Positives = 34/78 (43%)
 Frame = -1

Query: 573  DKQQNCENSPQGHVFNEAQVIGTWHPQQHKSKKTYAFGDSECVQLTSVNEQERNELKEMI 394
            +K+ +C ++  G +++  Q+  +      + ++ Y   D  C++   V      E  E  
Sbjct: 2168 EKEWSCADTQCGKIYDREQMESSLLEMVRQRERMYHMQDVVCIRCNQVKAAHLTEQCECS 2227

Query: 393  GNYVDKMKWENLTLRMQI 340
            G++  K      + RM+I
Sbjct: 2228 GSFRCKESGSEFSKRMEI 2245


>At3g43520.1 68416.m04614 expressed protein contains Pfam profile
           PF03647: Uncharacterised protein family (UPF0136)
          Length = 240

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 13/42 (30%), Positives = 24/42 (57%)
 Frame = +1

Query: 265 PVKTVALKTL*IIVFGYIMFVTRTRYLHSQS*VLPFHFVDVI 390
           P K V   T+ +++ G +M+V  TRY+ S+  + P   V ++
Sbjct: 183 PTKPVLASTVGVVMAGALMYVMGTRYMRSKK-IFPAGVVSIM 223


>At5g20380.1 68418.m02424 transporter-related low similarity to
           vesicular glutamate transporter 3 [Rattus norvegicus]
           GI:21685382
          Length = 517

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 11/31 (35%), Positives = 15/31 (48%)
 Frame = +2

Query: 509 PITWASLKTWPCGEFSQFCCLSCTSLTFGDA 601
           P  WA + T  CG +  + CLS     F +A
Sbjct: 317 PAVWAMIYTHFCGSWGHYTCLSWLPTYFSEA 347


>At1g50500.1 68414.m05664 membrane trafficking VPS53 family protein
           contains Pfam domain PF04100: Vps53-like, N-terminal
          Length = 798

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 15/63 (23%), Positives = 31/63 (49%)
 Frame = -1

Query: 594 PKVNDVHDKQQNCENSPQGHVFNEAQVIGTWHPQQHKSKKTYAFGDSECVQLTSVNEQER 415
           PK+ ++ +K  N +   + HVF++   +GT   +  ++       DS C+ + ++    R
Sbjct: 157 PKITELREKLNNIKQILKSHVFSDFSSLGT-GKETEETNLLQKLSDS-CLVVDALEPSVR 214

Query: 414 NEL 406
            EL
Sbjct: 215 EEL 217


>At3g27470.1 68416.m03433 expressed protein contains Pfam profile
           PF05212: Protein of unknown function (DUF707)
          Length = 398

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 15/47 (31%), Positives = 21/47 (44%)
 Frame = -1

Query: 417 RNELKEMIGNYVDKMKWENLTLRMQIPCPSDKHNVTKDYYLERLEGD 277
           +N++ +   NY D   W +   R     P D      D+YL RL GD
Sbjct: 76  KNDIPDPPYNYNDTKIWVSTNPRGAERLPPDIVTPESDFYLRRLWGD 122


>At1g53345.1 68414.m06047 expressed protein
          Length = 325

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 17/51 (33%), Positives = 27/51 (52%)
 Frame = -1

Query: 501 HPQQHKSKKTYAFGDSECVQLTSVNEQERNELKEMIGNYVDKMKWENLTLR 349
           H    +S +    GD E  +  +VN  E  EL+  +GN + + K +NL+LR
Sbjct: 215 HEVLEQSYEIVLGGDEEFGRCLAVNADEITELRSELGNQLAE-KSKNLSLR 264


>At1g12760.1 68414.m01481 zinc finger (C3HC4-type RING finger)
           family protein low similarity to SP|Q9NVW2 RING finger
           protein 12 (LIM domain interacting RING finger protein)
           {Homo sapiens}; contains Pfam profile: PF00097 zinc
           finger, C3HC4 type (RING finger)
          Length = 368

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 26/103 (25%), Positives = 41/103 (39%)
 Frame = -1

Query: 591 KVNDVHDKQQNCENSPQGHVFNEAQVIGTWHPQQHKSKKTYAFGDSECVQLTSVNEQERN 412
           K   + D  ++  +  QG         GT  P +H    T    D+EC    S  E +  
Sbjct: 270 KFRKLGDANKHTNDEAQGTTEGIMTECGTDSPIEH----TLLQEDAECCICLSAYE-DGT 324

Query: 411 ELKEMIGNYVDKMKWENLTLRMQIPCPSDKHNVTKDYYLERLE 283
           EL+E+   +       +  L +   CP  K+N+ K   L+R E
Sbjct: 325 ELRELPCGHHFHCSCVDKWLYINATCPLCKYNILKSSNLDREE 367


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,570,935
Number of Sequences: 28952
Number of extensions: 318425
Number of successful extensions: 912
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 887
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 912
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1428369392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)