Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10k09f
(584 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC6G10.12c |ace2||transcription factor Ace2|Schizosaccharomyce... 28 1.2
SPAC12B10.07 |acp1||F-actin capping protein alpha subunit|Schizo... 27 1.5
SPAC3H5.08c |||WD repeat protein Wdr44 family|Schizosaccharomyce... 26 3.5
SPAC23C4.03 |||haspin related kinase|Schizosaccharomyces pombe|c... 26 3.5
SPBC119.04 |mei3||meiosis inducing protein Mei3 |Schizosaccharom... 26 3.5
SPBC776.02c |dis2|sds1, bws1|serine/threonine protein phosphatas... 26 3.5
SPAC1A6.08c |mug125||sequence orphan|Schizosaccharomyces pombe|c... 26 3.5
SPCC1223.13 |cbf12||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Ma... 26 3.5
SPAC22G7.10 |||mRNA cleavage and polyadenylation specificity fac... 26 4.7
SPAC1A6.06c |meu31||sequence orphan|Schizosaccharomyces pombe|ch... 26 4.7
SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb... 25 6.2
SPAC22G7.04 |ubp13|pan2|poly|Schizosaccharomyces pombe|chr 1|||M... 25 6.2
SPAC17C9.06 |sam50||SAM complex subunit Sam50 |Schizosaccharomyc... 25 8.1
SPBC16E9.11c |pub3||ubiquitin-protein ligase E3|Schizosaccharomy... 25 8.1
>SPAC6G10.12c |ace2||transcription factor Ace2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 533
Score = 27.9 bits (59), Expect = 1.2
Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Frame = -2
Query: 421 LESCKNRRPQDALNNSLWLHYVC-HSDKVFAFSELSSPISF 302
LE ++P AL++S VC H+D AF++LSSP +
Sbjct: 284 LEPTSPQKPSFALDSSFSHLDVCRHTDNQKAFAKLSSPAEY 324
>SPAC12B10.07 |acp1||F-actin capping protein alpha
subunit|Schizosaccharomyces pombe|chr 1|||Manual
Length = 256
Score = 27.5 bits (58), Expect = 1.5
Identities = 12/36 (33%), Positives = 25/36 (69%), Gaps = 1/36 (2%)
Frame = +1
Query: 232 VQLTSVNEQERNELKEMIGNYVDKMKWENLT-LRMQ 336
V+L+S+N+++ EL+ + K+ WEN++ +RM+
Sbjct: 219 VELSSLNDKKFKELRRQLPVTRQKINWENVSGIRMR 254
>SPAC3H5.08c |||WD repeat protein Wdr44 family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 855
Score = 26.2 bits (55), Expect = 3.5
Identities = 19/54 (35%), Positives = 25/54 (46%)
Frame = -2
Query: 358 VCHSDKVFAFSELSSPISFCRRNSRSFLLIRFFPVR*PKLIEHIRSPRMRKFSL 197
V D VFA +L + R+NS + FFP + I SP+ R FSL
Sbjct: 621 VFRQDSVFAARKLIEKKNIERKNSETLSNSSFFPQALKAHMNSISSPK-RHFSL 673
>SPAC23C4.03 |||haspin related kinase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 488
Score = 26.2 bits (55), Expect = 3.5
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = -2
Query: 385 LNNSLWLHYVCHSDKVFAFSELSSPISFCRRNSRSFL 275
+ N LWLHY+ H ++ LSSP++ RS L
Sbjct: 412 ITNVLWLHYLIH--QLLHKKNLSSPLTETETLMRSRL 446
>SPBC119.04 |mei3||meiosis inducing protein Mei3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 148
Score = 26.2 bits (55), Expect = 3.5
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = +2
Query: 140 ATSSTKPRLLAHGTRNNTNQRKLTHSGT 223
A ST PR + NTN + + H+GT
Sbjct: 26 ARRSTSPRTSTGSSSTNTNTKTVDHAGT 53
>SPBC776.02c |dis2|sds1, bws1|serine/threonine protein phosphatase
PP1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 327
Score = 26.2 bits (55), Expect = 3.5
Identities = 16/51 (31%), Positives = 21/51 (41%)
Frame = +3
Query: 30 TASMYSNRIIGSGSNKRVSESQRCTRQAAKL*KFSARPRLQRSPGYWHMAP 182
+A Y +G+ V ES C+ Q K + R Q S WHM P
Sbjct: 267 SAPNYCGEFDNAGAMMSVDESLLCSFQILKPAEKKQRYGYQGSSQNWHMTP 317
>SPAC1A6.08c |mug125||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 285
Score = 26.2 bits (55), Expect = 3.5
Identities = 23/77 (29%), Positives = 34/77 (44%)
Frame = +1
Query: 199 KKTYAFGDSECVQLTSVNEQERNELKEMIGNYVDKMKWENLTLRMQIPCPSDKHNVTKDY 378
K+T A D+ V+L+ N L + NY DK+ + + + PS +
Sbjct: 207 KETLAALDN--VKLSDENAAHLGYLVKYFQNYTDKIILKETLMDWEDKEPSLQELTESTK 264
Query: 379 YLERLEGDGFYRTLNMP 429
YLE L D +RT N P
Sbjct: 265 YLENL-ADTDHRTSNKP 280
>SPCC1223.13 |cbf12||CBF1/Su|Schizosaccharomyces pombe|chr
3|||Manual
Length = 963
Score = 26.2 bits (55), Expect = 3.5
Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Frame = -2
Query: 415 SCKNRRPQDALNNSLWLHYVCHSDKVFAF--SELSSPISF 302
S +R P +A+N L + CH K F + + SS ISF
Sbjct: 759 SLSSRAPSEAINCLSKLAFQCHETKRFLYIDEKQSSEISF 798
>SPAC22G7.10 |||mRNA cleavage and polyadenylation specificity factor
complex subunit, Fip1 homolog |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 344
Score = 25.8 bits (54), Expect = 4.7
Identities = 14/50 (28%), Positives = 22/50 (44%), Gaps = 2/50 (4%)
Frame = +1
Query: 334 QIPCPSDKHNVTKDYYLERLEGDGFYRTLNMPPPTA--KLEFGVFRRYPI 477
QIP P NV + + GF + +PPP + + G R +P+
Sbjct: 176 QIPGPLPSGNVPSPAEFQAMMASGFPPFMPIPPPIGGPQEDMGYSRNFPV 225
>SPAC1A6.06c |meu31||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 185
Score = 25.8 bits (54), Expect = 4.7
Identities = 18/62 (29%), Positives = 28/62 (45%)
Frame = -1
Query: 203 FFDLCCCGCHVPITWASLKTWPCGEFSQFCCLSCTSLTFGDAFITPAANNTIRIHRRCGD 24
FF +C C + I ++ C + +SC+ T FI AA+N I + CG
Sbjct: 84 FFSMCLRSCTI-IYFSMNPYMLCEILNARNVISCSLNTQKFFFIIVAASNVYSIFQLCGC 142
Query: 23 ML 18
+L
Sbjct: 143 LL 144
>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 2685
Score = 25.4 bits (53), Expect = 6.2
Identities = 10/27 (37%), Positives = 15/27 (55%)
Frame = -3
Query: 516 HYTKVLILDDLQTYWVTTKDAEFQFSS 436
H K L+ D + +WV T DA+ + S
Sbjct: 1915 HLLKFLLEDSKKRFWVKTSDADREHGS 1941
>SPAC22G7.04 |ubp13|pan2|poly|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1115
Score = 25.4 bits (53), Expect = 6.2
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = +1
Query: 220 DSECVQLTSVNEQERNELKEMIGNYVDKM 306
DS+C+ ++ Q RN + +IG Y K+
Sbjct: 123 DSDCIDYRAMFYQSRNNPEVVIGGYHQKL 151
>SPAC17C9.06 |sam50||SAM complex subunit Sam50 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 475
Score = 25.0 bits (52), Expect = 8.1
Identities = 10/27 (37%), Positives = 12/27 (44%)
Frame = -1
Query: 140 PCGEFSQFCCLSCTSLTFGDAFITPAA 60
PCG + C S G + TPAA
Sbjct: 418 PCGTYKSILSKPCISTGLGLVYATPAA 444
>SPBC16E9.11c |pub3||ubiquitin-protein ligase E3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 786
Score = 25.0 bits (52), Expect = 8.1
Identities = 14/46 (30%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
Frame = +2
Query: 92 STMYTTSSKTVKILRK--ATSSTKPRLLAHGTRNNTNQRKLTHSGT 223
ST TT+++T + + AT++T + ++ TRN T+ +GT
Sbjct: 151 STPTTTTARTTRTTPRPTATTNTSNQSTSNSTRNGTSAATSNGTGT 196
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,485,233
Number of Sequences: 5004
Number of extensions: 53120
Number of successful extensions: 167
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 164
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 167
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 252150250
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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