Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10k09f
         (584 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_3066| Best HMM Match : dsrm (HMM E-Value=2.2e-32)                   29   2.1  
SB_53237| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.9  
SB_55828| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.4  
SB_35540| Best HMM Match : IF3_N (HMM E-Value=4.4e-07)                 28   6.4  
SB_54381| Best HMM Match : Trigger_C (HMM E-Value=0.55)                27   8.5  
SB_46524| Best HMM Match : Galactosyl_T (HMM E-Value=1.2)              27   8.5  
SB_42127| Best HMM Match : Galactosyl_T (HMM E-Value=0.01)             27   8.5  
SB_30413| Best HMM Match : WSC (HMM E-Value=2.4)                       27   8.5  

>SB_3066| Best HMM Match : dsrm (HMM E-Value=2.2e-32)
          Length = 429

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 9/24 (37%), Positives = 19/24 (79%)
 Frame = -2

Query: 577 GVRRLLYRQMALCLKGTRDSPLYQ 506
           G+R+ LY Q+ LC++G ++S +++
Sbjct: 345 GLRKFLYNQLELCVQGDQNSSIFE 368


>SB_53237| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 825

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 18/73 (24%), Positives = 34/73 (46%), Gaps = 3/73 (4%)
 Frame = +1

Query: 1   ELRSDVNMSPQRRCILIVLLAA---GVINASPKVNDVHDKQQNCENSPQGHVFNEAQVIG 171
           EL +  N SP  +CIL +   +   G++  +  +    DKQ   + +  GH   +   + 
Sbjct: 328 ELFNQNNRSPLPKCILQIRKESFFNGMVYTNDSIFASADKQSKRDGAKTGHRAYQGTRVW 387

Query: 172 TWHPQQHKSKKTY 210
            +H ++ KS K +
Sbjct: 388 CYHGEKGKSAKFF 400


>SB_55828| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 295

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +1

Query: 127 NSPQGHVFNEAQVIGTWHPQQHKSKKTYAF 216
           N P   V+N  QV  TW  +Q+ ++K Y F
Sbjct: 74  NRPLRQVWNCLQVSATWINEQYSTRKKYFF 103


>SB_35540| Best HMM Match : IF3_N (HMM E-Value=4.4e-07)
          Length = 284

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
 Frame = +1

Query: 100 VHDKQQNCENSPQGHVFNEAQVIGTWHPQ--QHKSKKTYAF 216
           ++D ++  ++SPQG+   E  + G   PQ  Q K+KK + F
Sbjct: 168 LYDAEKKHKHSPQGNKVKELTITGHIAPQDLQWKTKKIHGF 208


>SB_54381| Best HMM Match : Trigger_C (HMM E-Value=0.55)
          Length = 607

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
 Frame = +2

Query: 89  KSTMYTTSSKTVKILRKATSSTKPRLLAHGTRNNTNQRKLTHSGTPNVFN*L-RSTNRKE 265
           K T   T+  T K+  K T     ++    T+N TN  K+T++ T  V N +    N K 
Sbjct: 184 KMTNKVTNKATYKVTNKVTYKVNNKVTNKVTKNVTN--KVTNNVTNKVTNEVTNKVNNKV 241

Query: 266 TN 271
           TN
Sbjct: 242 TN 243


>SB_46524| Best HMM Match : Galactosyl_T (HMM E-Value=1.2)
          Length = 177

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 11/30 (36%), Positives = 14/30 (46%)
 Frame = -2

Query: 424 CLESCKNRRPQDALNNSLWLHYVCHSDKVF 335
           CL    N  P    NN +W H+ C  D V+
Sbjct: 70  CLNRLLNELPGRPKNNLVWGHFYCLKDLVY 99


>SB_42127| Best HMM Match : Galactosyl_T (HMM E-Value=0.01)
          Length = 361

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 11/30 (36%), Positives = 14/30 (46%)
 Frame = -2

Query: 424 CLESCKNRRPQDALNNSLWLHYVCHSDKVF 335
           CL    N  P    NN +W H+ C  D V+
Sbjct: 171 CLNRLLNELPGRPKNNLVWGHFYCLKDLVY 200


>SB_30413| Best HMM Match : WSC (HMM E-Value=2.4)
          Length = 259

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 13/41 (31%), Positives = 23/41 (56%)
 Frame = +1

Query: 22  MSPQRRCILIVLLAAGVINASPKVNDVHDKQQNCENSPQGH 144
           MS + R ++ +++A  +  A+  V DV+  +  C N PQ H
Sbjct: 1   MSSRVRVLMCLVVAVAMRGAAGCVEDVNFVRVGCYNDPQEH 41


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,918,188
Number of Sequences: 59808
Number of extensions: 406275
Number of successful extensions: 1949
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1864
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1948
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1410146228
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)