Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10k09f
         (584 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    24   0.96 
DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    22   3.9  
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    21   8.9  
DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse tr...    21   8.9  
DQ494418-1|ABF55369.1|  110|Apis mellifera telomerase reverse tr...    21   8.9  
DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein p...    21   8.9  
AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor p...    21   8.9  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    21   8.9  

>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 24.2 bits (50), Expect = 0.96
 Identities = 18/67 (26%), Positives = 30/67 (44%)
 Frame = -2

Query: 385 LNNSLWLHYVCHSDKVFAFSELSSPISFCRRNSRSFLLIRFFPVR*PKLIEHIRSPRMRK 206
           L  S  + YV   ++V+    L    +       S  + +  PVR   L  ++ S  MR 
Sbjct: 220 LRLSRLVRYVSQWEEVYILQNLQKKRTRAEGRLSSDNMSKKSPVRKATLFLNMASVFMRI 279

Query: 205 FSLICVV 185
           F+LIC++
Sbjct: 280 FNLICMM 286


>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = -1

Query: 86  GDAFITPAANNTIRIHRRCG 27
           G  +ITP     ++IH  CG
Sbjct: 311 GYKYITPLIQKHLKIHDTCG 330


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +1

Query: 358 HNVTKDYYLERLEGDG 405
           H+VT+   L RL GDG
Sbjct: 132 HDVTERNKLVRLSGDG 147


>DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 127

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +2

Query: 212 HSGTPNVFN*LRSTNRKET 268
           H+   N+F  ++STN K T
Sbjct: 56  HNHIQNIFKIIKSTNEKIT 74


>DQ494418-1|ABF55369.1|  110|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 110

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +2

Query: 212 HSGTPNVFN*LRSTNRKET 268
           H+   N+F  ++STN K T
Sbjct: 39  HNHIQNIFKIIKSTNEKIT 57


>DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein
           protein.
          Length = 430

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = +1

Query: 409 YRTLNMPPPTAKLEFGVFRRYPIRLKIIENEY 504
           YRTL   P +++ EF V  R      + +N Y
Sbjct: 271 YRTLFFHPLSSRREFAVSTRILRDENLSQNSY 302


>AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor
           protein.
          Length = 139

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = -3

Query: 411 VKTVALKTL*IIVFGYIM 358
           ++T A KTL IIV G+I+
Sbjct: 3   METKAAKTLGIIVGGFIL 20


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = -3

Query: 411 VKTVALKTL*IIVFGYIM 358
           ++T A KTL IIV G+I+
Sbjct: 451 METKAAKTLGIIVGGFIL 468


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 168,195
Number of Sequences: 438
Number of extensions: 3841
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16993167
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)