Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10k08r
(723 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g76730.1 68414.m08930 5-formyltetrahydrofolate cyclo-ligase f... 31 1.0
At1g06550.1 68414.m00694 enoyl-CoA hydratase/isomerase family pr... 30 1.4
At5g56690.1 68418.m07076 F-box family protein contains F-box dom... 30 1.8
At5g63450.1 68418.m07965 cytochrome P450, putative 28 7.2
At4g00730.1 68417.m00099 anthocyaninless2 (ANL2) nearly identica... 27 9.5
At3g48520.1 68416.m05296 cytochrome P450 family protein similar ... 27 9.5
At1g59453.1 68414.m06679 transcription factor-related weak simil... 27 9.5
At1g59077.1 68414.m06670 hypothetical protein 27 9.5
At1g58766.1 68414.m06659 hypothetical protein 27 9.5
>At1g76730.1 68414.m08930 5-formyltetrahydrofolate cyclo-ligase
family protein contains Pfam profile PF01812
5-formyltetrahydrofolate cyclo-ligase
Length = 354
Score = 30.7 bits (66), Expect = 1.0
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = -3
Query: 535 PRTSSGIVSQLSSDLSSPKTRLSLCTSATVS 443
PR +G S L SDL P+T + CTS V+
Sbjct: 171 PRLRTGFFSVLESDLLKPETIMEACTSVGVA 201
>At1g06550.1 68414.m00694 enoyl-CoA hydratase/isomerase family
protein similar to CHY1 [gi:8572760]; contains Pfam
profile PF00388 enoyl-CoA hydratase/isomerase family
protein
Length = 387
Score = 30.3 bits (65), Expect = 1.4
Identities = 34/118 (28%), Positives = 54/118 (45%), Gaps = 4/118 (3%)
Frame = -2
Query: 626 SEVITNVVNKLIRNNKMNCMEYAYQLWLQGSKDIVRDCFPVEFRL---IFAENAIKLMYK 456
+E IT V+ L R++ ++ Q +G K + DC EFRL I + MY
Sbjct: 263 NEWITPVIKGLKRSSPTG-LKIVLQSIREGRKQTLSDCLKKEFRLTLNILRKTISPDMY- 320
Query: 455 RDGL-ALTLSNDVQGDDGRPAYGDGKDKTSPRVSWKLIALWENNKVYFKILNTERNQY 285
+G+ ALT+ D PA D D +K L+E++ + +I TE N++
Sbjct: 321 -EGIRALTIDKD-NSPKWNPATLDEVDDEKINSVFK---LFEDDDIELQIPETEENRW 373
>At5g56690.1 68418.m07076 F-box family protein contains F-box domain
Pfam:PF00646
Length = 402
Score = 29.9 bits (64), Expect = 1.8
Identities = 17/60 (28%), Positives = 30/60 (50%)
Frame = -2
Query: 332 NNKVYFKILNTERNQYLVLGVGTNWNGDHMAFGVNSVDSFRAQWYLQPAKYDNDVLFYIY 153
N+K ++K + +YL + N F +NS+++FR +WY + D D L I+
Sbjct: 333 NSKSFYK---EKIGEYLPVSWSKNQGSVPKCF-LNSLETFRVKWYYSEEQEDRDFLSLIF 388
>At5g63450.1 68418.m07965 cytochrome P450, putative
Length = 510
Score = 27.9 bits (59), Expect = 7.2
Identities = 16/40 (40%), Positives = 24/40 (60%)
Frame = -2
Query: 386 GKDKTSPRVSWKLIALWENNKVYFKILNTERNQYLVLGVG 267
G+D TS ++W L +N+ V KIL+ RN+ LG+G
Sbjct: 306 GRDTTSAAMTWLFWLLSQNDDVETKILDELRNKG-SLGLG 344
>At4g00730.1 68417.m00099 anthocyaninless2 (ANL2) nearly identical
to Anthocyaninless2 [Arabidopsis thaliana] GI:5702094
Length = 802
Score = 27.5 bits (58), Expect = 9.5
Identities = 13/23 (56%), Positives = 13/23 (56%)
Frame = -2
Query: 305 NTERNQYLVLGVGTNWNGDHMAF 237
N N L L VGTN NG H AF
Sbjct: 270 NHHYNSSLELAVGTNNNGGHFAF 292
>At3g48520.1 68416.m05296 cytochrome P450 family protein similar to
Cytochrome P450 94A1 (P450-dependent fatty acid
omega-hydroxylase) (SP:O81117) {Vicia sativa}; contains
Pfam profile: PF00067 cytochrome P450
Length = 506
Score = 27.5 bits (58), Expect = 9.5
Identities = 16/40 (40%), Positives = 23/40 (57%)
Frame = -2
Query: 386 GKDKTSPRVSWKLIALWENNKVYFKILNTERNQYLVLGVG 267
G+D TS ++W L EN+ V KIL E + + LG+G
Sbjct: 304 GRDTTSAAMTWLFWLLTENDDVERKILE-EVDPLVSLGLG 342
>At1g59453.1 68414.m06679 transcription factor-related weak similarity
to TFIIIC Box B-binding subunit [Homo sapiens] GI:442362
Length = 1729
Score = 27.5 bits (58), Expect = 9.5
Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Frame = -2
Query: 713 LEEQLYNSVVVADYDSAVEKSKHLYEEKKSEV-ITNV 606
LEE N VV +DY ++ +K H+ E +V I N+
Sbjct: 1545 LEEHRSNDVVTSDYSTSKDKQVHVSENSVHKVTILNI 1581
>At1g59077.1 68414.m06670 hypothetical protein
Length = 665
Score = 27.5 bits (58), Expect = 9.5
Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Frame = -2
Query: 713 LEEQLYNSVVVADYDSAVEKSKHLYEEKKSEV-ITNV 606
LEE N VV +DY ++ +K H+ E +V I N+
Sbjct: 481 LEEHRSNDVVTSDYSTSKDKQVHVSENSVHKVTILNI 517
>At1g58766.1 68414.m06659 hypothetical protein
Length = 665
Score = 27.5 bits (58), Expect = 9.5
Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Frame = -2
Query: 713 LEEQLYNSVVVADYDSAVEKSKHLYEEKKSEV-ITNV 606
LEE N VV +DY ++ +K H+ E +V I N+
Sbjct: 481 LEEHRSNDVVTSDYSTSKDKQVHVSENSVHKVTILNI 517
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,856,234
Number of Sequences: 28952
Number of extensions: 268096
Number of successful extensions: 955
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 927
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 955
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1575119672
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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