Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10k07r
         (768 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC24B10.20 |||short chain dehydrogenase |Schizosaccharomyces p...    26   5.2  
SPCC188.11 |prp45|cwf13, snw1, SPCC584.08|transcriptional regula...    26   6.8  
SPAC2F7.04 |pmc2|med1|RNA polymerase II holoenzyme mediator comp...    26   6.8  

>SPCC24B10.20 |||short chain dehydrogenase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 254

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 12/36 (33%), Positives = 17/36 (47%)
 Frame = -1

Query: 372 GLSISSIVPLSNGVGGPTLTGSPGDCQVSQWSDWSK 265
           G+ +S +  LSN  G      + G    S+  DWSK
Sbjct: 17  GIGLSLVKELSNKEGVTVFASARGPGSASELKDWSK 52


>SPCC188.11 |prp45|cwf13, snw1, SPCC584.08|transcriptional regulator
           Prp45|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 557

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = +1

Query: 493 VVLAAATSAVVEGNAHPLHGHEGPALVQSSARPL 594
           + L   +S  V+ NA    GHE   LVQ+S R L
Sbjct: 91  LALQVTSSGAVDYNAIARQGHEHGELVQASFRDL 124


>SPAC2F7.04 |pmc2|med1|RNA polymerase II holoenzyme mediator complex
           subunit |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 454

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 10/34 (29%), Positives = 20/34 (58%)
 Frame = +1

Query: 460 ASVHTVFLREEVVLAAATSAVVEGNAHPLHGHEG 561
           +S++ ++  E  +LA   + ++ GN  PL  +EG
Sbjct: 155 SSLNAIYEAELSLLAQEENVIMHGNGKPLSNYEG 188


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,613,317
Number of Sequences: 5004
Number of extensions: 48515
Number of successful extensions: 114
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 114
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 369323696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)