Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10k07r
         (768 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0588 - 23456714-23456902,23458533-23458739                       31   0.77 
09_04_0387 - 17197626-17197785,17198095-17198213,17198751-171988...    31   1.3  
06_03_0345 + 19758188-19758382,19759857-19759952,19760061-197601...    31   1.3  
01_01_0326 - 2642408-2643607                                           29   4.1  
05_01_0402 - 3173354-3173591,3173704-3173828,3174104-3174370,317...    28   7.1  
03_02_0404 - 8165211-8165318,8165397-8165733,8166031-8166242,816...    28   7.1  
01_01_0153 - 1352982-1353731                                           28   9.4  

>01_05_0588 - 23456714-23456902,23458533-23458739
          Length = 131

 Score = 31.5 bits (68), Expect = 0.77
 Identities = 16/39 (41%), Positives = 21/39 (53%)
 Frame = -3

Query: 586 VQRTVPALGLRGHEGDVHSLQLRRMSRQPEQLPHARRLY 470
           V R  P+L LRG   DV S  + R+  +   + H RRLY
Sbjct: 42  VYRDHPSLKLRGVPKDVRSHDIERVRNKENSIRHYRRLY 80


>09_04_0387 -
           17197626-17197785,17198095-17198213,17198751-17198857,
           17199000-17199078,17199210-17199551,17199695-17199847,
           17199949-17200267,17200457-17200680
          Length = 500

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 14/41 (34%), Positives = 25/41 (60%)
 Frame = -3

Query: 622 QTHMYGGTHSRAVQRTVPALGLRGHEGDVHSLQLRRMSRQP 500
           Q H++  T+ R+ +R +    L  H+GD H L+LR++ + P
Sbjct: 105 QAHLFKPTYPRSKERMIGPSALFFHQGDYH-LRLRKLVQGP 144


>06_03_0345 +
           19758188-19758382,19759857-19759952,19760061-19760144,
           19760504-19760573,19760934-19761838,19763661-19764287
          Length = 658

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 19/58 (32%), Positives = 25/58 (43%)
 Frame = -3

Query: 328 WSYPDGKSRRLSGEPVERLEQVQPALRSRLPGARQDYSCTARPGRSAVSEANVAAPTV 155
           W +P    R  +G    R   V+PA  + LP A       A P  +  S A  AAPT+
Sbjct: 369 WPFPTSPKRAAAGSRRGRAPAVEPAAAAPLPPA-----AVAAPASTGPSRARSAAPTL 421


>01_01_0326 - 2642408-2643607
          Length = 399

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 10/21 (47%), Positives = 11/21 (52%)
 Frame = -1

Query: 312 GSPGDCQVSQWSDWSKCSQPC 250
           GSPG C +  WSD      PC
Sbjct: 322 GSPGFCSLKSWSDHPTTDDPC 342


>05_01_0402 -
           3173354-3173591,3173704-3173828,3174104-3174370,
           3174488-3174856,3175099-3175608
          Length = 502

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 8/26 (30%), Positives = 16/26 (61%)
 Frame = -3

Query: 502 PEQLPHARRLYEHLQDYARWSSAGGI 425
           P+ +PH  R + H ++  +W+S  G+
Sbjct: 392 PQDMPHTFRKFAHPENAGKWNSGSGL 417


>03_02_0404 -
           8165211-8165318,8165397-8165733,8166031-8166242,
           8166419-8166526,8166676-8166783,8166884-8166993,
           8167122-8167228,8167349-8167566,8167674-8167841,
           8168033-8168151,8168438-8168525,8168655-8168849,
           8168968-8169271,8169363-8169480,8170034-8170133,
           8170283-8170468
          Length = 861

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 16/54 (29%), Positives = 24/54 (44%), Gaps = 2/54 (3%)
 Frame = -1

Query: 609 MEEPTQGPCRGLYQRWAFVAMKGMCIPFNYGGCRGSQNNFLTQEDC--MNTCKI 454
           +E P +G      +  +F    G C  +N+G C  SQ   + QE C  M  C +
Sbjct: 783 LECPREGQVISNIKFASFGTPSGTCGNYNHGECSSSQALAVVQEACVGMTNCSV 836


>01_01_0153 - 1352982-1353731
          Length = 249

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 9/12 (75%), Positives = 9/12 (75%)
 Frame = -2

Query: 710 SRPRAPPPWSCC 675
           SRPRA  PW CC
Sbjct: 35  SRPRAAKPWDCC 46


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,802,458
Number of Sequences: 37544
Number of extensions: 439782
Number of successful extensions: 1258
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1228
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1258
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2063219900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)