Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10k07r
         (768 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              24   1.4  
AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter...    23   3.1  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    23   4.1  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    23   4.1  
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    21   9.5  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    21   9.5  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    21   9.5  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 21/73 (28%), Positives = 28/73 (38%), Gaps = 5/73 (6%)
 Frame = -3

Query: 331 WWSYPDGKSRRLSGEPVERLEQVQPALRSRLPGARQD--YSCTAR---PGRSAVSEANVA 167
           W+ + +G SRR   +  ER+ QV   L  R         Y C       G S  +   V 
Sbjct: 246 WYKFIEGSSRRQPVQLNERVRQVSGTLIIREARVEDSGKYLCIVNNSVGGESVETVLTVT 305

Query: 166 APTVLQAVLSTHT 128
           AP   +   ST T
Sbjct: 306 APLGAEIEPSTQT 318


>AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter
           transporter-1A protein.
          Length = 203

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +3

Query: 567 AGTVLCTALEWVPPYICVWR 626
           AGT+L   L W+  Y C+W+
Sbjct: 177 AGTLL---LVWILCYFCIWK 193


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = +3

Query: 567 AGTVLCTALEWVPPYICVWR*ACRW 641
           AGT+   A+ W+  Y C+W+   +W
Sbjct: 210 AGTL---AVVWIMCYFCIWK-GVKW 230


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = +3

Query: 567 AGTVLCTALEWVPPYICVWR*ACRW 641
           AGT+   A+ W+  Y C+W+   +W
Sbjct: 263 AGTL---AVVWIMCYFCIWK-GVKW 283


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -1

Query: 234 ERVRTILAQPGPGGVP 187
           E ++T    PGP GVP
Sbjct: 323 ESMKTARENPGPPGVP 338


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -1

Query: 234 ERVRTILAQPGPGGVP 187
           E ++T    PGP GVP
Sbjct: 323 ESMKTARENPGPPGVP 338


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -1

Query: 234 ERVRTILAQPGPGGVP 187
           E ++T    PGP GVP
Sbjct: 262 ESMKTARENPGPPGVP 277


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 190,702
Number of Sequences: 438
Number of extensions: 4075
Number of successful extensions: 11
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24032646
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)