Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10k07f
         (601 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17A2.14 ||SPAC17G6.01|CorA family magnesium ion transporter|...    29   0.69 
SPBC106.12c |||THO complex subunit |Schizosaccharomyces pombe|ch...    29   0.69 
SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual       28   0.91 
SPCC1919.02 |||pig-X|Schizosaccharomyces pombe|chr 3|||Manual          28   1.2  
SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces...    27   1.6  
SPBC146.14c |sec26|SPBC337.01c|coatomer beta subunit |Schizosacc...    27   2.8  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    25   8.5  

>SPAC17A2.14 ||SPAC17G6.01|CorA family magnesium ion
           transporter|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 617

 Score = 28.7 bits (61), Expect = 0.69
 Identities = 15/47 (31%), Positives = 23/47 (48%)
 Frame = +2

Query: 170 NHYRLIVNGEVERYAPDQRYVVTLVGSRTHDVVQQFAGFKIILDPLN 310
           NHY  I++     Y       +TLV + T++V+ +      IL PLN
Sbjct: 524 NHYEKILSRSHSNYLAQISINMTLVSNETNEVLSRLTILGTILIPLN 570


>SPBC106.12c |||THO complex subunit |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 274

 Score = 28.7 bits (61), Expect = 0.69
 Identities = 19/68 (27%), Positives = 34/68 (50%)
 Frame = +2

Query: 260 DVVQQFAGFKIILDPLNPDTRRAPSKQGQFQLFADTLTKFDEECTNSVVEADDLPKTEVQ 439
           DV+  F  F  I   +N D  RA   +G   ++ +T    D E     +++ +L  +E+Q
Sbjct: 100 DVLSLFENFHPIRVIMNYD--RAGRSEGSCDVYFETSQ--DAEDAQKTLQSTNLKGSEIQ 155

Query: 440 VMWKAPPA 463
           +  K+PP+
Sbjct: 156 ISKKSPPS 163


>SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 738

 Score = 28.3 bits (60), Expect = 0.91
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = -3

Query: 569 TETCPRRFVWSTDRLQRTNDSHFHT 495
           TE CP+ FVW  +++ +    + HT
Sbjct: 506 TEDCPKEFVWGVEKVFQERRLNIHT 530


>SPCC1919.02 |||pig-X|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 332

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = -3

Query: 551 RFVWSTDRLQRTNDSHFHTPSPSKARILNQPVALS 447
           +F W+ D   + ND  F   S +K  + N P  LS
Sbjct: 256 KFFWNCDTEDKVNDFRFLFSSKNKYTLQNDPTTLS 290


>SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1485

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 13/43 (30%), Positives = 24/43 (55%)
 Frame = -1

Query: 298 KDYFEARKLLYYVMSAGTDQSHDISLIRRISLNFSVNNQPVVI 170
           K Y + + L Y  +   TDQ HD S I+ + +N+  ++ P ++
Sbjct: 564 KTYTDVKGLRYGHLMIMTDQDHDGSHIKGLIINYLESSYPSLL 606


>SPBC146.14c |sec26|SPBC337.01c|coatomer beta subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 940

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 13/28 (46%), Positives = 14/28 (50%)
 Frame = -3

Query: 167 LQVTLNLLQDLDLARRPVPRTLGPATLK 84
           L V L  L DL +  RP P  LGP   K
Sbjct: 756 LSVDLATLGDLKVVERPPPMNLGPHAFK 783


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 10/23 (43%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
 Frame = -3

Query: 524 QRTNDSHFH-TPSPSKARILNQP 459
           Q T++   H TPSP K ++L+ P
Sbjct: 577 QETSEQQVHKTPSPEKQKVLSPP 599


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,462,220
Number of Sequences: 5004
Number of extensions: 50007
Number of successful extensions: 145
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 145
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 262236260
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)