Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10k07f
(601 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0996 + 33667663-33667900,33668019-33668091,33668785-336688... 30 1.2
06_03_1104 + 27623632-27623795,27624052-27624175,27624316-276248... 29 2.8
02_05_0133 - 26117998-26118243,26118320-26119592,26120773-26121080 29 2.8
10_07_0188 + 13921731-13921938,13922076-13922338,13922463-13923257 28 5.0
12_02_0453 + 19192060-19192301,19192477-19192559,19193246-191933... 28 6.6
10_08_0009 + 14075929-14076789 27 8.7
03_02_0231 - 6608910-6608997,6609169-6609320,6609561-6609608 27 8.7
01_06_0840 + 32343700-32344138,32345329-32345419,32345584-323458... 27 8.7
>01_06_0996 +
33667663-33667900,33668019-33668091,33668785-33668841,
33668970-33669067,33669482-33669637,33669744-33670366,
33670484-33670560,33671551-33671805,33671950-33672067,
33672174-33672345,33672434-33672975
Length = 802
Score = 30.3 bits (65), Expect = 1.2
Identities = 15/48 (31%), Positives = 22/48 (45%)
Frame = -2
Query: 528 SSANQRLAFSYTIAFKSTHPEPAGGAFHMTWTSVLGRSSASTTEFVHS 385
S Q++ Y KSTHP+ + H T+VLG S +H+
Sbjct: 87 SHLKQKIKPFYHFKGKSTHPDDVIASHHDMLTTVLGSKEDSLASIIHN 134
>06_03_1104 +
27623632-27623795,27624052-27624175,27624316-27624832,
27624943-27625073,27625161-27625567,27625690-27625963,
27626195-27626814,27627424-27627859
Length = 890
Score = 29.1 bits (62), Expect = 2.8
Identities = 12/37 (32%), Positives = 22/37 (59%)
Frame = +2
Query: 173 HYRLIVNGEVERYAPDQRYVVTLVGSRTHDVVQQFAG 283
HY+ I+ G + + D ++T+ G RT +V ++AG
Sbjct: 325 HYQHIIEGTINAMSRDDERLLTIEGCRTALLVLRYAG 361
>02_05_0133 - 26117998-26118243,26118320-26119592,26120773-26121080
Length = 608
Score = 29.1 bits (62), Expect = 2.8
Identities = 27/113 (23%), Positives = 47/113 (41%), Gaps = 1/113 (0%)
Frame = +2
Query: 137 GPGVGSKSPGDNHYRLIVNGEVERYAPDQRYVVTLVGSRTHDVVQQFAGFKIILDPLNPD 316
G G G + +H L + E+ P QR L G ++DV +++ N
Sbjct: 471 GGGGGGVTIAASHSSLAIVTVSEQDNPSQR---ELEGKSSNDVGNVQLAVPLLVH--NAP 525
Query: 317 TRRAPSKQGQFQLFADTL-TKFDEECTNSVVEADDLPKTEVQVMWKAPPAGSG 472
++ +G+ + A T DE C + DD K + ++ ++ P AG G
Sbjct: 526 DKKVEGSEGEPNVTAAAEETDSDEMCGEYTDDGDDDDKMQYKIEFQKPTAGGG 578
>10_07_0188 + 13921731-13921938,13922076-13922338,13922463-13923257
Length = 421
Score = 28.3 bits (60), Expect = 5.0
Identities = 10/14 (71%), Positives = 10/14 (71%)
Frame = -3
Query: 341 PVCWAPSLCPGSKD 300
PVCWAP PGS D
Sbjct: 241 PVCWAPPSAPGSYD 254
>12_02_0453 +
19192060-19192301,19192477-19192559,19193246-19193328,
19193616-19193668,19194041-19194169,19194585-19194643,
19195317-19195429,19195571-19195663,19195810-19195912,
19196233-19196315,19196407-19196448
Length = 360
Score = 27.9 bits (59), Expect = 6.6
Identities = 16/66 (24%), Positives = 29/66 (43%)
Frame = +2
Query: 140 PGVGSKSPGDNHYRLIVNGEVERYAPDQRYVVTLVGSRTHDVVQQFAGFKIILDPLNPDT 319
P +K G+ H+ +++ R Q YV+ + H+ ++ G II+DP
Sbjct: 259 PSAFTKVTGEAHWEILLRA---RAIETQCYVIAAAQAGKHNEKRESYGDSIIIDPWGTVI 315
Query: 320 RRAPSK 337
R P +
Sbjct: 316 ARLPDR 321
>10_08_0009 + 14075929-14076789
Length = 286
Score = 27.5 bits (58), Expect = 8.7
Identities = 13/47 (27%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Frame = -2
Query: 507 AFSYTIAFKSTHPEPAGGAFHMTW-TSVLGRSSASTTEFVHSSSNLV 370
A Y +A +S+ P PA G F W T+ L ++ + + H + +++
Sbjct: 38 AIDYFMATQSSKPAPANGVFAPYWDTANLSPAAVAAAKAAHPNLSVI 84
>03_02_0231 - 6608910-6608997,6609169-6609320,6609561-6609608
Length = 95
Score = 27.5 bits (58), Expect = 8.7
Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
Frame = +2
Query: 134 PGPGVGSKSPGDNH--YRLIVNGEVERYAPDQRYVVTLVGSRTH 259
P G G P H + +I+NGEVE P+ + + G+ H
Sbjct: 9 PNNGSGPPPPSLKHVIFHVIINGEVEGIGPNSPKLSYMSGTSIH 52
>01_06_0840 +
32343700-32344138,32345329-32345419,32345584-32345866,
32346023-32346097,32346470-32346514,32346889-32346979,
32347060-32347118,32347621-32347704,32348109-32348168,
32348585-32348637,32348724-32348757,32349334-32350335,
32350477-32351035,32351873-32352372,32352793-32353200
Length = 1260
Score = 27.5 bits (58), Expect = 8.7
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = +2
Query: 419 LPKTEVQVMWKAPPAGSGCVLLKAMVYENA 508
+P +E + ++K PPAGS ++L + E A
Sbjct: 658 IPSSEQKKVFKRPPAGSRKIILSTNIAETA 687
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,537,252
Number of Sequences: 37544
Number of extensions: 382853
Number of successful extensions: 1188
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1188
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1435654836
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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