Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10k07f
         (601 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_59289| Best HMM Match : Lectin_C (HMM E-Value=2.1e-05)              30   1.6  
SB_1139| Best HMM Match : wnt (HMM E-Value=0)                          29   3.8  
SB_36169| Best HMM Match : DUF676 (HMM E-Value=0)                      28   5.0  
SB_34156| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.0  
SB_47680| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.0  
SB_50054| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.6  
SB_50053| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.6  
SB_36566| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.6  
SB_54609| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.8  
SB_50552| Best HMM Match : Exo_endo_phos (HMM E-Value=0.00012)         27   8.8  

>SB_59289| Best HMM Match : Lectin_C (HMM E-Value=2.1e-05)
          Length = 769

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 13/25 (52%), Positives = 17/25 (68%)
 Frame = -2

Query: 126 SQASAADTRPSHTKILRLPILFGLK 52
           ++ASAAD RP HT  L  P++ G K
Sbjct: 8   NEASAADRRPGHTARLHSPLMAGPK 32


>SB_1139| Best HMM Match : wnt (HMM E-Value=0)
          Length = 500

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = -3

Query: 314 PGSKDQGLF*SPQTVVLRHECGNRPESRH 228
           PG++D GLF S Q    +  C +R  SRH
Sbjct: 35  PGNEDGGLFPSMQAARAQEACRSRAVSRH 63


>SB_36169| Best HMM Match : DUF676 (HMM E-Value=0)
          Length = 2442

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = +2

Query: 362 DTLTKFDEECTNSVVEAD 415
           D++TK DEE TNSV + D
Sbjct: 483 DSITKLDEELTNSVTQQD 500


>SB_34156| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 287

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 18/54 (33%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
 Frame = +2

Query: 95  LGLVSAALACELNPGPGVGSKSPGDNHYRLIVNGEVERYAPDQR-YVVTLVGSR 253
           LGL +A++  + +    +G    G++  RL+  G VERY+P+ R + V+L   R
Sbjct: 172 LGLSAASI--DNSSSVVMGVVGLGNDTARLVYTGGVERYSPESRAFAVSLFDQR 223


>SB_47680| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2749

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = -2

Query: 153 EPTPGPGFSSQASAADTRPSHTKILRLPIL 64
           +PTP P   S     DTRP    I R+P++
Sbjct: 582 QPTPPPQTPSATRRTDTRPRPVSIERVPLM 611


>SB_50054| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 937

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = +2

Query: 530 GQLTKRICEDTSLSIPDCCACD 595
           GQ+  R C D  L  P+ C C+
Sbjct: 735 GQIPDRTCNDVELRTPNLCVCE 756


>SB_50053| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 959

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = +2

Query: 530 GQLTKRICEDTSLSIPDCCACD 595
           GQ+  R C D  L  P+ C C+
Sbjct: 687 GQIPDRTCNDVELRTPNLCVCE 708


>SB_36566| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1653

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = +2

Query: 530  GQLTKRICEDTSLSIPDCCACD 595
            GQ+  R C D  L  P+ C C+
Sbjct: 1381 GQIPDRTCNDVELRTPNLCVCE 1402


>SB_54609| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 408

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 13/24 (54%), Positives = 16/24 (66%), Gaps = 2/24 (8%)
 Frame = -2

Query: 402 TEFVHSSSNLVKVSAKS--WNCPC 337
           +EF +  +NLV VSAKS  W C C
Sbjct: 77  SEFGNCQNNLVPVSAKSCPWTCGC 100


>SB_50552| Best HMM Match : Exo_endo_phos (HMM E-Value=0.00012)
          Length = 966

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +2

Query: 155 KSPGDNHYRLIVNGEVERYAPDQRYV 232
           +S GD   R++VN E +R  P + YV
Sbjct: 669 RSQGDTESRIVVNFETKRAIPHKHYV 694


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,552,567
Number of Sequences: 59808
Number of extensions: 418617
Number of successful extensions: 1244
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1244
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1451595000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)