Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10k07f
(601 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AK074803-1|BAC11217.1| 807|Homo sapiens protein ( Homo sapiens ... 95 1e-19
AB051390-1|BAB18461.1| 807|Homo sapiens VSGP/F-spondin protein. 95 1e-19
AB018305-1|BAA34482.2| 724|Homo sapiens KIAA0762 protein protein. 85 2e-16
U79716-1|AAC51105.1| 3460|Homo sapiens reelin protein. 38 0.020
AC073208-1|AAP22355.1| 44|Homo sapiens unknown protein. 34 0.44
U77546-1|AAB36755.1| 120|Homo sapiens immunoglobulin variable r... 30 7.1
U77545-1|AAB36754.1| 120|Homo sapiens immunoglobulin variable r... 30 7.1
>AK074803-1|BAC11217.1| 807|Homo sapiens protein ( Homo sapiens
cDNA FLJ90322 fis, clone NT2RP2001755, highly similar to
Rattus norvegicus f-spondin mRNA. ).
Length = 807
Score = 95.5 bits (227), Expect = 1e-19
Identities = 54/158 (34%), Positives = 79/158 (50%), Gaps = 7/158 (4%)
Frame = +2
Query: 149 GSKSPGDNHYRLIVNGEVERYAPDQRYVVTLVGSRTHDVVQQFAGFKIILDPLNPDTRRA 328
G++ G + L V G+ + Y P Y VTL + F GF +I N + +
Sbjct: 52 GTRREGYTEFSLRVEGDPDFYKPGTSYRVTLSAAPP----SYFRGFTLIALRENREGDKE 107
Query: 329 PSKQGQFQLFADTLTKFDEECTNSVVEADDLPKTEVQVMWKAPPAGSGCVLLKAMVYENA 508
G FQ+ + T+F C +V E+ +T +QV W APPAG+GCV+LKA + +
Sbjct: 108 EDHAGTFQIIDEEETQFMSNCPVAVTESTPRRRTRIQVFWIAPPAGTGCVILKASIVQKR 167
Query: 509 SRWFAEDGQLTKRICED-------TSLSIPDCCACDDA 601
+F ++G LTK++CE T I DCCAC A
Sbjct: 168 IIYFQDEGSLTKKLCEQDSTFDGVTDKPILDCCACGTA 205
>AB051390-1|BAB18461.1| 807|Homo sapiens VSGP/F-spondin protein.
Length = 807
Score = 95.5 bits (227), Expect = 1e-19
Identities = 54/158 (34%), Positives = 79/158 (50%), Gaps = 7/158 (4%)
Frame = +2
Query: 149 GSKSPGDNHYRLIVNGEVERYAPDQRYVVTLVGSRTHDVVQQFAGFKIILDPLNPDTRRA 328
G++ G + L V G+ + Y P Y VTL + F GF +I N + +
Sbjct: 52 GTRREGYTEFSLRVEGDPDFYKPGTSYRVTLSAAPP----SYFRGFTLIALRENREGDKE 107
Query: 329 PSKQGQFQLFADTLTKFDEECTNSVVEADDLPKTEVQVMWKAPPAGSGCVLLKAMVYENA 508
G FQ+ + T+F C +V E+ +T +QV W APPAG+GCV+LKA + +
Sbjct: 108 EDHAGTFQIIDEEETQFMSNCPVAVTESTPRRRTRIQVFWIAPPAGTGCVILKASIVQKR 167
Query: 509 SRWFAEDGQLTKRICED-------TSLSIPDCCACDDA 601
+F ++G LTK++CE T I DCCAC A
Sbjct: 168 IIYFQDEGSLTKKLCEQDSTFDGVTDKPILDCCACGTA 205
>AB018305-1|BAA34482.2| 724|Homo sapiens KIAA0762 protein protein.
Length = 724
Score = 84.6 bits (200), Expect = 2e-16
Identities = 43/116 (37%), Positives = 62/116 (53%), Gaps = 7/116 (6%)
Frame = +2
Query: 275 FAGFKIILDPLNPDTRRAPSKQGQFQLFADTLTKFDEECTNSVVEADDLPKTEVQVMWKA 454
F GF +I N + + G FQ+ + T+F C +V E+ +T +QV W A
Sbjct: 7 FRGFTLIALRENREGDKEEDHAGTFQIIDEEETQFMSNCPVAVTESTPRRRTRIQVFWIA 66
Query: 455 PPAGSGCVLLKAMVYENASRWFAEDGQLTKRICED-------TSLSIPDCCACDDA 601
PPAG+GCV+LKA + + +F ++G LTK++CE T I DCCAC A
Sbjct: 67 PPAGTGCVILKASIVQKRIIYFQDEGSLTKKLCEQDSTFDGVTDKPILDCCACGTA 122
>U79716-1|AAC51105.1| 3460|Homo sapiens reelin protein.
Length = 3460
Score = 38.3 bits (85), Expect = 0.020
Identities = 35/136 (25%), Positives = 50/136 (36%)
Frame = +2
Query: 149 GSKSPGDNHYRLIVNGEVERYAPDQRYVVTLVGSRTHDVVQQFAGFKIILDPLNPDTRRA 328
G G+ L + G Y P Q Y VT+ S D + G +
Sbjct: 48 GDGEQGEVLISLHIAGNPTYYVPGQEYHVTISTSTFFDGLL-VTGLYTSTSVQASQSIGG 106
Query: 329 PSKQGQFQLFADTLTKFDEECTNSVVEADDLPKTEVQVMWKAPPAGSGCVLLKAMVYENA 508
S G F + +D C+ LP T + +W APPAG+GCV A
Sbjct: 107 SSAFG-FGIMSDHQFGNQFMCSVVASHVSHLPTTNLSFIWIAPPAGTGCVNFMATATHRG 165
Query: 509 SRWFAEDGQLTKRICE 556
F + L +++CE
Sbjct: 166 QVIFKD--ALAQQLCE 179
>AC073208-1|AAP22355.1| 44|Homo sapiens unknown protein.
Length = 44
Score = 33.9 bits (74), Expect = 0.44
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +2
Query: 389 CTNSVVEADDLPKTEVQVMWKAPPAGSGCV 478
C+ LP T + +W APPAG+GCV
Sbjct: 13 CSVVASHVSHLPTTNLSFIWIAPPAGTGCV 42
>U77546-1|AAB36755.1| 120|Homo sapiens immunoglobulin variable
region protein.
Length = 120
Score = 29.9 bits (64), Expect = 7.1
Identities = 13/24 (54%), Positives = 17/24 (70%)
Frame = +2
Query: 293 ILDPLNPDTRRAPSKQGQFQLFAD 364
I++P N DTR +PS QGQ + AD
Sbjct: 50 IINPRNSDTRYSPSFQGQVTISAD 73
>U77545-1|AAB36754.1| 120|Homo sapiens immunoglobulin variable
region protein.
Length = 120
Score = 29.9 bits (64), Expect = 7.1
Identities = 13/24 (54%), Positives = 17/24 (70%)
Frame = +2
Query: 293 ILDPLNPDTRRAPSKQGQFQLFAD 364
I++P N DTR +PS QGQ + AD
Sbjct: 50 IINPRNSDTRYSPSFQGQVTISAD 73
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 92,266,332
Number of Sequences: 237096
Number of extensions: 1974720
Number of successful extensions: 5656
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 5485
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5646
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 6297951520
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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