Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10k07f
         (601 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              24   0.99 
AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    23   1.7  
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    23   2.3  
AF441189-1|AAL73401.1|  134|Apis mellifera ribosomal protein 49 ...    23   3.0  
DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II lar...    22   5.3  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    22   5.3  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 24.2 bits (50), Expect = 0.99
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +2

Query: 404  VEADDLPKTEVQVMWKAPP 460
            +  DDL +  ++V WK PP
Sbjct: 983  IRVDDLDQHTLKVTWKPPP 1001



 Score = 21.0 bits (42), Expect = 9.2
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +3

Query: 258  MT*YNSLRASK*SLIL*TRTQGGRP 332
            +T YN +     S +L TRT+G +P
Sbjct: 1437 VTAYNGIGTGDPSDMLNTRTKGSKP 1461


>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = -1

Query: 322 PCVRVQRIKDYFEARKLLYYVMSA 251
           P  R+QR+ D+F    LL + ++A
Sbjct: 49  PLDRLQRVVDWFRKNMLLVFTIAA 72


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 12/26 (46%), Positives = 13/26 (50%)
 Frame = +2

Query: 92  WLGLVSAALACELNPGPGVGSKSPGD 169
           +L   S  LA E    PG GSK P D
Sbjct: 42  FLQCASLKLAFEPRRNPGPGSKGPRD 67


>AF441189-1|AAL73401.1|  134|Apis mellifera ribosomal protein 49
           protein.
          Length = 134

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 8/26 (30%), Positives = 14/26 (53%)
 Frame = -1

Query: 511 TRIFIHHRLQKHAS*TSRWRFPHDLD 434
           T+ FI H+  +++     WR P  +D
Sbjct: 16  TKKFIRHQSDRYSKLKRNWRKPKGID 41


>DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II large
           subunit protein.
          Length = 296

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -2

Query: 333 LGALLVSGFKGSRIILKPANCC 268
           L A++VSG KGS I +     C
Sbjct: 227 LKAMVVSGSKGSNINISQVIAC 248


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 8/30 (26%), Positives = 15/30 (50%)
 Frame = +2

Query: 431 EVQVMWKAPPAGSGCVLLKAMVYENASRWF 520
           E+    K+    + CVL    ++++ S WF
Sbjct: 471 EISTRPKSNTVENACVLKNTEIFKDKSDWF 500


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 167,482
Number of Sequences: 438
Number of extensions: 3561
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17604432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)