Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10k07f
         (601 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g51490.1 68418.m06386 pectinesterase family protein contains ...    30   1.3  
At1g27020.1 68414.m03294 expressed protein                             28   5.4  
At5g19020.1 68418.m02260 pentatricopeptide (PPR) repeat-containi...    27   7.2  
At4g00300.1 68417.m00037 fringe-related protein + weak similarit...    27   7.2  
At4g08790.1 68417.m01448 nitrilase, putative similar to nitrilas...    27   9.5  

>At5g51490.1 68418.m06386 pectinesterase family protein contains
           Pfam profile: PF01095 pectinesterase
          Length = 536

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 17/48 (35%), Positives = 25/48 (52%)
 Frame = -2

Query: 441 TWTSVLGRSSASTTEFVHSSSNLVKVSAKSWNCPCLLGALLVSGFKGS 298
           T T   G S  + T+F+    +  K+S    NC  + GALL +G KG+
Sbjct: 148 TETCRRGSSDLNVTDFITPIVSNTKISHLISNCLAVNGALLTAGNKGN 195


>At1g27020.1 68414.m03294 expressed protein
          Length = 308

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +2

Query: 362 DTLTKFDEECTNSVVEADDLPKTEVQVMWKAPP 460
           D+L  F  +    V    D PK +VQV+W +PP
Sbjct: 71  DSLASFFMDYGYKVGGRLDFPKKKVQVLWLSPP 103


>At5g19020.1 68418.m02260 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 939

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 14/42 (33%), Positives = 23/42 (54%)
 Frame = +2

Query: 392 TNSVVEADDLPKTEVQVMWKAPPAGSGCVLLKAMVYENASRW 517
           T+  VE  +L  TE+  +    P+  GC ++ + VY +A RW
Sbjct: 876 THGNVEIAELAATELAAI---DPSHGGCKVMLSNVYADAGRW 914


>At4g00300.1 68417.m00037 fringe-related protein + weak similarity
           to Fringe [Schistocerca gregaria](GI:6573138);Fringe
           encodes an extracellular protein that regulates Notch
           signalling.
          Length = 785

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 16/55 (29%), Positives = 21/55 (38%)
 Frame = +2

Query: 128 LNPGPGVGSKSPGDNHYRLIVNGEVERYAPDQRYVVTLVGSRTHDVVQQFAGFKI 292
           L  G G   KS      +    G      PD  Y    VG R++ +V    GFK+
Sbjct: 550 LKTGDGSSEKSYFTGRIKYRRGGASREVGPDNVYNTARVGKRSNGLVDMSWGFKV 604


>At4g08790.1 68417.m01448 nitrilase, putative similar to nitrilase 1
           [Mus musculus] GI:3228668; contains Pfam profile
           PF00795: hydrolase, carbon-nitrogen family
          Length = 307

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 17/75 (22%), Positives = 32/75 (42%)
 Frame = +2

Query: 140 PGVGSKSPGDNHYRLIVNGEVERYAPDQRYVVTLVGSRTHDVVQQFAGFKIILDPLNPDT 319
           P   +K  G+ H+ +++     R    Q YV+    +  H+  ++  G  +I+DP     
Sbjct: 212 PSAFTKVTGEAHWEILLRA---RAIETQCYVIAAAQAGKHNEKRESYGDTLIIDPWGTVV 268

Query: 320 RRAPSKQGQFQLFAD 364
            R P +     + AD
Sbjct: 269 GRLPDRVSTGIVVAD 283


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,402,421
Number of Sequences: 28952
Number of extensions: 282738
Number of successful extensions: 761
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 742
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 761
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1187288784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)