Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10k05r
         (731 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC458.02c |||mRNP complex |Schizosaccharomyces pombe|chr 1|||M...    29   0.90 
SPBC582.08 |||alanine aminotransferase |Schizosaccharomyces pomb...    26   4.8  
SPAC17H9.02 |||ATP-dependent RNA helicase Mtr4-like |Schizosacch...    26   6.4  
SPCC74.03c |ssp2|ucp9|serine/threonine protein kinase Ssp2|Schiz...    26   6.4  
SPAC9G1.04 |oxa101|oxa1, oxa1-1, oxa1sp1|mitochondrial inner mem...    25   8.4  
SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1 |Schizosacc...    25   8.4  

>SPAC458.02c |||mRNP complex |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 468

 Score = 28.7 bits (61), Expect = 0.90
 Identities = 10/44 (22%), Positives = 24/44 (54%)
 Frame = -2

Query: 727 QISPDVQLKEVPTNGEEYLLKVIKERKNIAAVTKCNKDYSKFAE 596
           ++  D  +K++    +   LK++ E+K +  +++CN+    F E
Sbjct: 106 EVELDKHVKQLQAAVDSGTLKIVDEKKYLREISQCNRTRKSFVE 149


>SPBC582.08 |||alanine aminotransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 505

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 16/44 (36%), Positives = 24/44 (54%)
 Frame = -2

Query: 631 TKCNKDYSKFAENQSQYVHEFPRLSVPEKLKPTIEWQNMQVADF 500
           TK  K  S    + + Y+H  P +S+PEKL  T + Q +Q  +F
Sbjct: 409 TKRMKRVSCLEPHGAMYLH--PSVSLPEKLITTAKAQKIQPDEF 450


>SPAC17H9.02 |||ATP-dependent RNA helicase Mtr4-like
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1030

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 17/51 (33%), Positives = 26/51 (50%)
 Frame = -2

Query: 670  LKVIKERKNIAAVTKCNKDYSKFAENQSQYVHEFPRLSVPEKLKPTIEWQN 518
            L +I+  K IA V+      SK   N+S Y+H+F     P+ ++P   W N
Sbjct: 921  LTIIEAAKRIATVSL----ESKLQFNESDYLHQFK----PDIMEPVSLWIN 963


>SPCC74.03c |ssp2|ucp9|serine/threonine protein kinase
           Ssp2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 576

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 14/55 (25%), Positives = 27/55 (49%)
 Frame = -2

Query: 667 KVIKERKNIAAVTKCNKDYSKFAENQSQYVHEFPRLSVPEKLKPTIEWQNMQVAD 503
           +VI+E+ +++   + +   S      S+Y  E  + S  E + PT+E     V+D
Sbjct: 346 QVIQEKSHLSKSKRVDSFLSVSPPAFSEYTSELQKKSKQELIDPTLEGPRWTVSD 400


>SPAC9G1.04 |oxa101|oxa1, oxa1-1, oxa1sp1|mitochondrial inner
           membrane translocase Oxa101|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 374

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
 Frame = -2

Query: 391 FFSTHIPTLSCVLGLQHA-LLDQGLEVLTDIISRTKPGNTIEHKTGQWVYAFLACTQLPL 215
           F    IP   C+L + +A L+  G+++     +R    +TI + T    + FL C   PL
Sbjct: 199 FKDLSIPDPYCILPIINAGLMFSGMQM-----NRANTASTIGNSTNWRTFFFLCCLLSPL 253

Query: 214 LS 209
           L+
Sbjct: 254 LT 255


>SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1072

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 15/39 (38%), Positives = 20/39 (51%)
 Frame = +3

Query: 261 VLCSIVLPGFVLLIISVSTSKPWSSNACCNPSTHDNVGI 377
           V+C  V  G +L II +  SK     +  NPS HDN  +
Sbjct: 127 VICLHVYQG-LLTIIPIFKSKKRFMTSHNNPSLHDNFSV 164


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,914,368
Number of Sequences: 5004
Number of extensions: 59228
Number of successful extensions: 156
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 156
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 345237368
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)