BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= fner10k05r (731 letters) Database: rice 37,544 sequences; 14,793,348 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value 11_03_0136 + 10591247-10591352,10591463-10591712,10595401-105955... 62 6e-10 11_01_0099 - 728644-728805,728915-729141,729427-729585,729683-72... 33 0.31 12_01_0098 - 765949-766110,766220-766446,766722-766880,766985-76... 31 1.2 01_06_1513 - 37884198-37884485,37884966-37886951,37886976-378873... 30 2.2 11_03_0150 + 10810322-10810380,10810530-10810593,10810803-108110... 29 5.0 11_04_0093 + 13407686-13409554 28 8.8 >11_03_0136 + 10591247-10591352,10591463-10591712,10595401-10595578, 10596741-10597136 Length = 309 Score = 61.7 bits (143), Expect = 6e-10 Identities = 60/221 (27%), Positives = 94/221 (42%), Gaps = 2/221 (0%) Frame = -2 Query: 718 PDVQLKEVPTNGEEYLLKVIKERKNIAAVTKCNKDYSKFAENQSQYVHEFPRLS-VPEKL 542 PD + E P +G EYL +V E I V D + Q+ Y+ E P ++ L Sbjct: 101 PDFESGE-PLDGFEYLRRVRWEANQIPRVKVAKIDLNTARNEQTPYMPEIPDIAKCSPDL 159 Query: 541 KPTIEWQNMQVADFSETRMYISRLLSKRXXXXXXXXXXXXKPTCVIEWKQFFSTHIPTLS 362 + W++ + FSETR+ S L S KP+ E + PTL+ Sbjct: 160 CASKPWEDTFITYFSETRLAFSELDSSDGPSVSGGTKNLLKPSNRSEPQTD-----PTLT 214 Query: 361 CVLGLQHALLDQGLEVLTDIISRTKPGNTIEHKTGQWVYAFLACTQLPLLSDTTSILRNL 182 + + L D+I + + W+++ PL ++T + LR+L Sbjct: 215 MIRNMDAVSRAATLRNYIDMIQSL---DKLSRNDCLWLFSLCVAVDTPLDAETCASLRSL 271 Query: 181 ARKCAEI-RFRLNPDEENAITAATPLNIFICLVARYFRQYD 62 RKCA + +L D+E A+ LNI I + R+F QYD Sbjct: 272 LRKCANVLAAKLEMDDEVAM-----LNILITISGRFFGQYD 307 >11_01_0099 - 728644-728805,728915-729141,729427-729585,729683-729772, 729783-729849 Length = 234 Score = 32.7 bits (71), Expect = 0.31 Identities = 23/68 (33%), Positives = 31/68 (45%) Frame = +3 Query: 21 IHYKFLFIKIQSARSYCLKYLATKHINIFKGVAAVIAFSSSGFSLNLISAHFRAKFLRIL 200 I FL IK + Y K H+ +KG A GF L+SA K LRI+ Sbjct: 57 IEIHFLQIKYNAIGVYLEKDNVLAHLESWKGKKAEELVQDDGFFQALVSAPVE-KLLRIV 115 Query: 201 VVSDNRGS 224 V+ + +GS Sbjct: 116 VIKEIKGS 123 >12_01_0098 - 765949-766110,766220-766446,766722-766880,766985-767063 Length = 208 Score = 30.7 bits (66), Expect = 1.2 Identities = 22/68 (32%), Positives = 30/68 (44%) Frame = +3 Query: 21 IHYKFLFIKIQSARSYCLKYLATKHINIFKGVAAVIAFSSSGFSLNLISAHFRAKFLRIL 200 I FL IK + Y K H+ +KG A GF L+SA K RI+ Sbjct: 31 IEIHFLQIKYNAIGVYLEKDNVLGHLESWKGKKAEELVQDDGFFQALVSAPVE-KLFRIV 89 Query: 201 VVSDNRGS 224 V+ + +GS Sbjct: 90 VIKEIKGS 97 >01_06_1513 - 37884198-37884485,37884966-37886951,37886976-37887305, 37887397-37887471,37887543-37887734,37887922-37888173, 37888248-37888803,37888881-37889088,37889624-37889736, 37890029-37890060,37890545-37890619 Length = 1368 Score = 29.9 bits (64), Expect = 2.2 Identities = 13/46 (28%), Positives = 25/46 (54%) Frame = -2 Query: 730 LQISPDVQLKEVPTNGEEYLLKVIKERKNIAAVTKCNKDYSKFAEN 593 L SPD+ L+ +P+ E L ++ +E + + +C++ S A N Sbjct: 540 LDESPDLSLENLPSKQNEVLTEISEEPATLDGMLECSRSGSSQASN 585 >11_03_0150 + 10810322-10810380,10810530-10810593,10810803-10811047, 10811627-10811747,10811821-10811895,10811986-10812112, 10812194-10812939,10813065-10813195,10813547-10813636, 10814000-10814105 Length = 587 Score = 28.7 bits (61), Expect = 5.0 Identities = 12/28 (42%), Positives = 16/28 (57%) Frame = -2 Query: 691 TNGEEYLLKVIKERKNIAAVTKCNKDYS 608 TNG + K++ E K A K N+DYS Sbjct: 176 TNGHHHKQKIVNEAKRKAEALKDNRDYS 203 >11_04_0093 + 13407686-13409554 Length = 622 Score = 27.9 bits (59), Expect = 8.8 Identities = 24/92 (26%), Positives = 39/92 (42%), Gaps = 4/92 (4%) Frame = -2 Query: 409 VIEWKQFFSTHIPTLSCVLGLQ--HALLDQGLEV--LTDIISRTKPGNTIEHKTGQWVYA 242 VI W + ++ + + L+ + +L QG++ +T + S N GQ V+ Sbjct: 290 VITWTTMMNGYLQCMQSEMALKLFNCMLVQGIQPNQVTFLGSLDACSNLAALCEGQQVHQ 349 Query: 241 FLACTQLPLLSDTTSILRNLARKCAEIRFRLN 146 + T + S L NL KC EIR N Sbjct: 350 MICKTPSQFDTFVESTLMNLYAKCGEIRLARN 381 Database: rice Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 14,793,348 Number of sequences in database: 37,544 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 16,709,409 Number of Sequences: 37544 Number of extensions: 313188 Number of successful extensions: 699 Number of sequences better than 10.0: 6 Number of HSP's better than 10.0 without gapping: 684 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 697 length of database: 14,793,348 effective HSP length: 80 effective length of database: 11,789,828 effective search space used: 1921741964 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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