Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10k05r
         (731 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_03_0136 + 10591247-10591352,10591463-10591712,10595401-105955...    62   6e-10
11_01_0099 - 728644-728805,728915-729141,729427-729585,729683-72...    33   0.31 
12_01_0098 - 765949-766110,766220-766446,766722-766880,766985-76...    31   1.2  
01_06_1513 - 37884198-37884485,37884966-37886951,37886976-378873...    30   2.2  
11_03_0150 + 10810322-10810380,10810530-10810593,10810803-108110...    29   5.0  
11_04_0093 + 13407686-13409554                                         28   8.8  

>11_03_0136 +
           10591247-10591352,10591463-10591712,10595401-10595578,
           10596741-10597136
          Length = 309

 Score = 61.7 bits (143), Expect = 6e-10
 Identities = 60/221 (27%), Positives = 94/221 (42%), Gaps = 2/221 (0%)
 Frame = -2

Query: 718 PDVQLKEVPTNGEEYLLKVIKERKNIAAVTKCNKDYSKFAENQSQYVHEFPRLS-VPEKL 542
           PD +  E P +G EYL +V  E   I  V     D +     Q+ Y+ E P ++     L
Sbjct: 101 PDFESGE-PLDGFEYLRRVRWEANQIPRVKVAKIDLNTARNEQTPYMPEIPDIAKCSPDL 159

Query: 541 KPTIEWQNMQVADFSETRMYISRLLSKRXXXXXXXXXXXXKPTCVIEWKQFFSTHIPTLS 362
             +  W++  +  FSETR+  S L S              KP+   E +       PTL+
Sbjct: 160 CASKPWEDTFITYFSETRLAFSELDSSDGPSVSGGTKNLLKPSNRSEPQTD-----PTLT 214

Query: 361 CVLGLQHALLDQGLEVLTDIISRTKPGNTIEHKTGQWVYAFLACTQLPLLSDTTSILRNL 182
            +  +        L    D+I      + +      W+++       PL ++T + LR+L
Sbjct: 215 MIRNMDAVSRAATLRNYIDMIQSL---DKLSRNDCLWLFSLCVAVDTPLDAETCASLRSL 271

Query: 181 ARKCAEI-RFRLNPDEENAITAATPLNIFICLVARYFRQYD 62
            RKCA +   +L  D+E A+     LNI I +  R+F QYD
Sbjct: 272 LRKCANVLAAKLEMDDEVAM-----LNILITISGRFFGQYD 307


>11_01_0099 -
           728644-728805,728915-729141,729427-729585,729683-729772,
           729783-729849
          Length = 234

 Score = 32.7 bits (71), Expect = 0.31
 Identities = 23/68 (33%), Positives = 31/68 (45%)
 Frame = +3

Query: 21  IHYKFLFIKIQSARSYCLKYLATKHINIFKGVAAVIAFSSSGFSLNLISAHFRAKFLRIL 200
           I   FL IK  +   Y  K     H+  +KG  A       GF   L+SA    K LRI+
Sbjct: 57  IEIHFLQIKYNAIGVYLEKDNVLAHLESWKGKKAEELVQDDGFFQALVSAPVE-KLLRIV 115

Query: 201 VVSDNRGS 224
           V+ + +GS
Sbjct: 116 VIKEIKGS 123


>12_01_0098 -
           765949-766110,766220-766446,766722-766880,766985-767063
          Length = 208

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 22/68 (32%), Positives = 30/68 (44%)
 Frame = +3

Query: 21  IHYKFLFIKIQSARSYCLKYLATKHINIFKGVAAVIAFSSSGFSLNLISAHFRAKFLRIL 200
           I   FL IK  +   Y  K     H+  +KG  A       GF   L+SA    K  RI+
Sbjct: 31  IEIHFLQIKYNAIGVYLEKDNVLGHLESWKGKKAEELVQDDGFFQALVSAPVE-KLFRIV 89

Query: 201 VVSDNRGS 224
           V+ + +GS
Sbjct: 90  VIKEIKGS 97


>01_06_1513 -
           37884198-37884485,37884966-37886951,37886976-37887305,
           37887397-37887471,37887543-37887734,37887922-37888173,
           37888248-37888803,37888881-37889088,37889624-37889736,
           37890029-37890060,37890545-37890619
          Length = 1368

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 13/46 (28%), Positives = 25/46 (54%)
 Frame = -2

Query: 730 LQISPDVQLKEVPTNGEEYLLKVIKERKNIAAVTKCNKDYSKFAEN 593
           L  SPD+ L+ +P+   E L ++ +E   +  + +C++  S  A N
Sbjct: 540 LDESPDLSLENLPSKQNEVLTEISEEPATLDGMLECSRSGSSQASN 585


>11_03_0150 +
           10810322-10810380,10810530-10810593,10810803-10811047,
           10811627-10811747,10811821-10811895,10811986-10812112,
           10812194-10812939,10813065-10813195,10813547-10813636,
           10814000-10814105
          Length = 587

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -2

Query: 691 TNGEEYLLKVIKERKNIAAVTKCNKDYS 608
           TNG  +  K++ E K  A   K N+DYS
Sbjct: 176 TNGHHHKQKIVNEAKRKAEALKDNRDYS 203


>11_04_0093 + 13407686-13409554
          Length = 622

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 24/92 (26%), Positives = 39/92 (42%), Gaps = 4/92 (4%)
 Frame = -2

Query: 409 VIEWKQFFSTHIPTLSCVLGLQ--HALLDQGLEV--LTDIISRTKPGNTIEHKTGQWVYA 242
           VI W    + ++  +   + L+  + +L QG++   +T + S     N      GQ V+ 
Sbjct: 290 VITWTTMMNGYLQCMQSEMALKLFNCMLVQGIQPNQVTFLGSLDACSNLAALCEGQQVHQ 349

Query: 241 FLACTQLPLLSDTTSILRNLARKCAEIRFRLN 146
            +  T     +   S L NL  KC EIR   N
Sbjct: 350 MICKTPSQFDTFVESTLMNLYAKCGEIRLARN 381


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,709,409
Number of Sequences: 37544
Number of extensions: 313188
Number of successful extensions: 699
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 684
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 697
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1921741964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)