Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10k05r
         (731 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB037701-1|BAB03508.1|  265|Homo sapiens SMN interacting protein...    92   2e-18
BC104968-1|AAI04969.1|  280|Homo sapiens survival of motor neuro...    87   8e-17
AJ250932-1|CAC16117.2|  269|Homo sapiens survival interacting pr...    87   8e-17
AF027150-1|AAB82297.1|  280|Homo sapiens survival of motor neuro...    87   8e-17
AB037702-1|BAB03509.1|  250|Homo sapiens SMN interacting protein...    60   6e-09

>AB037701-1|BAB03508.1|  265|Homo sapiens SMN interacting
           protein1-beta protein.
          Length = 265

 Score = 91.9 bits (218), Expect = 2e-18
 Identities = 65/220 (29%), Positives = 97/220 (44%), Gaps = 6/220 (2%)
 Frame = -2

Query: 694 PTNGEEYLLKVIKERKNIAAVTKCNKDYSKFAENQSQYVHEFPRLSVPEKLKPTIEWQNM 515
           P   +EYL +V  E      V     D  K    QS  +        PE   PT++WQ  
Sbjct: 46  PRTPQEYLRRVQIEAAQCPDVVVAQIDPKKLKRKQSVNISLSGCQPAPEGYSPTLQWQQQ 105

Query: 514 QVADFSETRMYISRLLSKRXXXXXXXXXXXXKPTCVIEWKQFFSTHIPTLSCVLGL---Q 344
           QVA FS  R  +++  S              K      WK+F           +G    +
Sbjct: 106 QVAQFSTVRQNVNKHRSHWKSQQLDSNVTMPKSEDEEGWKKFCLGEKLCADGAVGPATNE 165

Query: 343 HALLDQGLEVLTDII---SRTKPGNTIEHKTGQWVYAFLACTQLPLLSDTTSILRNLARK 173
              +D     +T ++   S          + G+W+YA LAC + PLL +  S++R LAR+
Sbjct: 166 SPGIDYVQATVTSVLEYLSNWFGERDFTPELGRWLYALLACLEKPLLPEAHSLIRQLARR 225

Query: 172 CAEIRFRLNPDEENAITAATPLNIFICLVARYFRQYDLAD 53
           C+E+R  ++  ++  + A   LN+ ICLV+RYF Q DLAD
Sbjct: 226 CSEVRLLVDSKDDERVPA---LNLLICLVSRYFDQRDLAD 262


>BC104968-1|AAI04969.1|  280|Homo sapiens survival of motor neuron
           protein interacting protein 1 protein.
          Length = 280

 Score = 86.6 bits (205), Expect = 8e-17
 Identities = 69/237 (29%), Positives = 103/237 (43%), Gaps = 23/237 (9%)
 Frame = -2

Query: 694 PTNGEEYLLKVIKERKNIAAVTKCNKDYSKFAENQSQYVHEFPRLSVPEKLKPTIEWQNM 515
           P   +EYL +V  E      V     D  K    QS  +        PE   PT++WQ  
Sbjct: 46  PRTPQEYLRRVQIEAAQCPDVVVAQIDPKKLKRKQSVNISLSGCQPAPEGYSPTLQWQQQ 105

Query: 514 QVADFSETRMYISRLLSKRXXXXXXXXXXXXKPTCVIEWKQFF--------STHIPTLSC 359
           QVA FS  R  +++  S              K      WK+F             P  + 
Sbjct: 106 QVAQFSTVRQNVNKHRSHWKSQQLDSNVTMPKSEDEEGWKKFCLGEKLCADGAVGPATNE 165

Query: 358 VLGLQHALLDQGLEVLTDIISRTKPG---NTIEH------------KTGQWVYAFLACTQ 224
             G+ +  +  G   L  I+SR       + +E+            + G+W+YA LAC +
Sbjct: 166 SPGIDYVQI--GFPPLLSIVSRMNQATVTSVLEYLSNWFGERDFTPELGRWLYALLACLE 223

Query: 223 LPLLSDTTSILRNLARKCAEIRFRLNPDEENAITAATPLNIFICLVARYFRQYDLAD 53
            PLL +  S++R LAR+C+E+R  ++  ++  + A   LN+ ICLV+RYF Q DLAD
Sbjct: 224 KPLLPEAHSLIRQLARRCSEVRLLVDSKDDERVPA---LNLLICLVSRYFDQRDLAD 277


>AJ250932-1|CAC16117.2|  269|Homo sapiens survival interacting
           protein 1 protein.
          Length = 269

 Score = 86.6 bits (205), Expect = 8e-17
 Identities = 69/237 (29%), Positives = 103/237 (43%), Gaps = 23/237 (9%)
 Frame = -2

Query: 694 PTNGEEYLLKVIKERKNIAAVTKCNKDYSKFAENQSQYVHEFPRLSVPEKLKPTIEWQNM 515
           P   +EYL +V  E      V     D  K    QS  +        PE   PT++WQ  
Sbjct: 35  PRTPQEYLRRVQIEAAQCPDVVVAQIDPKKLKRKQSVNISLSGCQPAPEGYSPTLQWQQQ 94

Query: 514 QVADFSETRMYISRLLSKRXXXXXXXXXXXXKPTCVIEWKQFF--------STHIPTLSC 359
           QVA FS  R  +++  S              K      WK+F             P  + 
Sbjct: 95  QVAQFSTVRQNVNKHRSHWKSQQLDSNVTMPKSEDEEGWKKFCLGEKLCADGAVGPATNE 154

Query: 358 VLGLQHALLDQGLEVLTDIISRTKPG---NTIEH------------KTGQWVYAFLACTQ 224
             G+ +  +  G   L  I+SR       + +E+            + G+W+YA LAC +
Sbjct: 155 SPGIDYVQI--GFPPLLSIVSRMNQATVTSVLEYLSNWFGERDFTPELGRWLYALLACLE 212

Query: 223 LPLLSDTTSILRNLARKCAEIRFRLNPDEENAITAATPLNIFICLVARYFRQYDLAD 53
            PLL +  S++R LAR+C+E+R  ++  ++  + A   LN+ ICLV+RYF Q DLAD
Sbjct: 213 KPLLPEAHSLIRQLARRCSEVRLLVDSKDDERVPA---LNLLICLVSRYFDQRDLAD 266


>AF027150-1|AAB82297.1|  280|Homo sapiens survival of motor neuron
           protein interacting protein 1 protein.
          Length = 280

 Score = 86.6 bits (205), Expect = 8e-17
 Identities = 69/237 (29%), Positives = 103/237 (43%), Gaps = 23/237 (9%)
 Frame = -2

Query: 694 PTNGEEYLLKVIKERKNIAAVTKCNKDYSKFAENQSQYVHEFPRLSVPEKLKPTIEWQNM 515
           P   +EYL +V  E      V     D  K    QS  +        PE   PT++WQ  
Sbjct: 46  PRTPQEYLRRVQIEAAQCPDVVVAQIDPKKLKRKQSVNISLSGCQPAPEGYSPTLQWQQQ 105

Query: 514 QVADFSETRMYISRLLSKRXXXXXXXXXXXXKPTCVIEWKQFF--------STHIPTLSC 359
           QVA FS  R  +++  S              K      WK+F             P  + 
Sbjct: 106 QVAQFSTVRQNVNKHRSHWKSQQLDSNVTMPKSEDEEGWKKFCLGEKLCADGAVGPATNE 165

Query: 358 VLGLQHALLDQGLEVLTDIISRTKPG---NTIEH------------KTGQWVYAFLACTQ 224
             G+ +  +  G   L  I+SR       + +E+            + G+W+YA LAC +
Sbjct: 166 SPGIDYVQI--GFPPLLSIVSRMNQATVTSVLEYLSNWFGERDFTPELGRWLYALLACLE 223

Query: 223 LPLLSDTTSILRNLARKCAEIRFRLNPDEENAITAATPLNIFICLVARYFRQYDLAD 53
            PLL +  S++R LAR+C+E+R  ++  ++  + A   LN+ ICLV+RYF Q DLAD
Sbjct: 224 KPLLPEAHSLIRQLARRCSEVRLLVDSKDDERVPA---LNLLICLVSRYFDQRDLAD 277


>AB037702-1|BAB03509.1|  250|Homo sapiens SMN interacting protein
           1-gamma protein.
          Length = 250

 Score = 60.5 bits (140), Expect = 6e-09
 Identities = 54/202 (26%), Positives = 81/202 (40%), Gaps = 23/202 (11%)
 Frame = -2

Query: 694 PTNGEEYLLKVIKERKNIAAVTKCNKDYSKFAENQSQYVHEFPRLSVPEKLKPTIEWQNM 515
           P   +EYL +V  E      V     D  K    QS  +        PE   PT++WQ  
Sbjct: 46  PRTPQEYLRRVQIEAAQCPDVVVAQIDPKKLKRKQSVNISLSGCQPAPEGYSPTLQWQQQ 105

Query: 514 QVADFSETRMYISRLLSKRXXXXXXXXXXXXKPTCVIEWKQFF--------STHIPTLSC 359
           QVA FS  R  +++  S              K      WK+F             P  + 
Sbjct: 106 QVAQFSTVRQNVNKHRSHWKSQQLDSNVTMPKSEDEEGWKKFCLGEKLCADGAVGPATNE 165

Query: 358 VLGLQHALLDQGLEVLTDIISRTKPG---NTIEH------------KTGQWVYAFLACTQ 224
             G+ +  +  G   L  I+SR       + +E+            + G+W+YA LAC +
Sbjct: 166 SPGIDYVQI--GFPPLLSIVSRMNQATVTSVLEYLSNWFGERDFTPELGRWLYALLACLE 223

Query: 223 LPLLSDTTSILRNLARKCAEIR 158
            PLL +  S++R LAR+C+E+R
Sbjct: 224 KPLLPEAHSLIRQLARRCSEVR 245


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 94,055,941
Number of Sequences: 237096
Number of extensions: 1890930
Number of successful extensions: 7019
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6939
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7015
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8679165170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)