Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10k05r
(731 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC024765-6|AAF60526.2| 254|Caenorhabditis elegans Smn (survival... 66 3e-11
AC024765-7|AAP31427.1| 130|Caenorhabditis elegans Smn (survival... 40 0.002
U50309-7|AAG24132.1| 1974|Caenorhabditis elegans Hypothetical pr... 30 1.9
Z81467-3|CAC42255.1| 1143|Caenorhabditis elegans Hypothetical pr... 29 2.6
Z81467-2|CAC42254.1| 1147|Caenorhabditis elegans Hypothetical pr... 29 2.6
AF195611-1|AAF15530.1| 1147|Caenorhabditis elegans LIN-41B protein. 29 2.6
AF195610-1|AAF15529.1| 1143|Caenorhabditis elegans LIN-41A protein. 29 2.6
U64843-13|AAF98228.1| 355|Caenorhabditis elegans Hypothetical p... 28 7.8
AF024492-4|AAF98617.1| 848|Caenorhabditis elegans Hypothetical ... 28 7.8
>AC024765-6|AAF60526.2| 254|Caenorhabditis elegans Smn (survival of
motor neuron)protein interactor protein 1, isoform a
protein.
Length = 254
Score = 65.7 bits (153), Expect = 3e-11
Identities = 62/244 (25%), Positives = 102/244 (41%), Gaps = 23/244 (9%)
Frame = -2
Query: 715 DVQLKEVPTNGEEYLLKVIKER---KNIAAVTKCNKDY-SKFAENQSQYVH-----EFPR 563
DV + + +YL ++ ER KN+ + + + D S A+ Q Q++ E +
Sbjct: 17 DVDMTSPAMSAAQYLRQMQAERRGTKNVVRIAQKSPDSTSPEAKKQKQWLESVGYQEVKK 76
Query: 562 LSVPEKLKPTIEWQNMQVADFSETRMYISRLLSK--------RXXXXXXXXXXXXKPTCV 407
+ P L P+ EW+ + F ETR ++ + K C+
Sbjct: 77 IETPSPLIPSEEWRQEKCRKFEETRAKMALKIEKFSPMRIDRLNSPEEEEWHEILLEKCL 136
Query: 406 IEWKQF---FSTHI---PTLSCVLGLQHALLDQGLEVLTDIISRTKPGNTIEHKTGQWVY 245
E++ F H P L V + L Q +E L D I +W+Y
Sbjct: 137 PEFQDIAGNFLNHTGTPPALRMVFSIPKRHLSQLIEYLVDWSIEEGLNRPIR----EWIY 192
Query: 244 AFLACTQLPLLSDTTSILRNLARKCAEIRFRLNPDEENAITAATPLNIFICLVARYFRQY 65
+ LA LPL+ D S LR L ++C +R L+ D + + A ++FI ++ +F Q
Sbjct: 193 SLLAVIDLPLVQDVVSALRRLVKECRSLRSELSIDRK---SEANEFSLFITIITIFFGQK 249
Query: 64 DLAD 53
DLAD
Sbjct: 250 DLAD 253
>AC024765-7|AAP31427.1| 130|Caenorhabditis elegans Smn (survival of
motor neuron)protein interactor protein 1, isoform b
protein.
Length = 130
Score = 39.9 bits (89), Expect = 0.002
Identities = 25/76 (32%), Positives = 33/76 (43%)
Frame = -2
Query: 373 PTLSCVLGLQHALLDQGLEVLTDIISRTKPGNTIEHKTGQWVYAFLACTQLPLLSDTTSI 194
P L V + L Q +E L D I +W+Y+ LA LPL+ D S
Sbjct: 51 PALRMVFSIPKRHLSQLIEYLVDWSIEEGLNRPIR----EWIYSLLAVIDLPLVQDVVSA 106
Query: 193 LRNLARKCAEIRFRLN 146
LR L ++C I F N
Sbjct: 107 LRRLVKECRFIDFSEN 122
>U50309-7|AAG24132.1| 1974|Caenorhabditis elegans Hypothetical protein
F58G4.1 protein.
Length = 1974
Score = 29.9 bits (64), Expect = 1.9
Identities = 10/27 (37%), Positives = 21/27 (77%)
Frame = -2
Query: 211 SDTTSILRNLARKCAEIRFRLNPDEEN 131
++T +LRN RKC E++F+++ D+++
Sbjct: 1844 AETQKVLRNKDRKCRELQFQVDEDKKS 1870
>Z81467-3|CAC42255.1| 1143|Caenorhabditis elegans Hypothetical
protein C12C8.3b protein.
Length = 1143
Score = 29.5 bits (63), Expect = 2.6
Identities = 15/35 (42%), Positives = 20/35 (57%)
Frame = +3
Query: 303 ISVSTSKPWSSNACCNPSTHDNVGIWVLKNCFHSI 407
I S P SS+ C THD+V I + +NC HS+
Sbjct: 462 IGSGESSPRSSSVC---GTHDSVIIGICENCPHSV 493
>Z81467-2|CAC42254.1| 1147|Caenorhabditis elegans Hypothetical
protein C12C8.3a protein.
Length = 1147
Score = 29.5 bits (63), Expect = 2.6
Identities = 15/35 (42%), Positives = 20/35 (57%)
Frame = +3
Query: 303 ISVSTSKPWSSNACCNPSTHDNVGIWVLKNCFHSI 407
I S P SS+ C THD+V I + +NC HS+
Sbjct: 466 IGSGESSPRSSSVC---GTHDSVIIGICENCPHSV 497
>AF195611-1|AAF15530.1| 1147|Caenorhabditis elegans LIN-41B protein.
Length = 1147
Score = 29.5 bits (63), Expect = 2.6
Identities = 15/35 (42%), Positives = 20/35 (57%)
Frame = +3
Query: 303 ISVSTSKPWSSNACCNPSTHDNVGIWVLKNCFHSI 407
I S P SS+ C THD+V I + +NC HS+
Sbjct: 466 IGSGESSPRSSSVC---GTHDSVIIGICENCPHSV 497
>AF195610-1|AAF15529.1| 1143|Caenorhabditis elegans LIN-41A protein.
Length = 1143
Score = 29.5 bits (63), Expect = 2.6
Identities = 15/35 (42%), Positives = 20/35 (57%)
Frame = +3
Query: 303 ISVSTSKPWSSNACCNPSTHDNVGIWVLKNCFHSI 407
I S P SS+ C THD+V I + +NC HS+
Sbjct: 462 IGSGESSPRSSSVC---GTHDSVIIGICENCPHSV 493
>U64843-13|AAF98228.1| 355|Caenorhabditis elegans Hypothetical
protein K06C4.8 protein.
Length = 355
Score = 27.9 bits (59), Expect = 7.8
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = +2
Query: 446 FPYFPF*QQTRYVHSSF*EICYLHVLPLNC 535
FP+FP + VH+ F C ++ PL C
Sbjct: 81 FPFFPGYHEIGSVHTIFSAFCLIYFYPLMC 110
>AF024492-4|AAF98617.1| 848|Caenorhabditis elegans Hypothetical
protein F14F9.3 protein.
Length = 848
Score = 27.9 bits (59), Expect = 7.8
Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 4/61 (6%)
Frame = -2
Query: 679 EYLLKVIKERKNI-AAVTKCNKDY---SKFAENQSQYVHEFPRLSVPEKLKPTIEWQNMQ 512
EYL K I + +I A++K + + E S F R ++PE K + EW+N
Sbjct: 370 EYLQKKISKELSIHKAISKITTEMLTNKRIVETMSMASKFFGRKTLPEFFKDSNEWENQL 429
Query: 511 V 509
V
Sbjct: 430 V 430
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,799,373
Number of Sequences: 27780
Number of extensions: 322295
Number of successful extensions: 927
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 893
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 925
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1714401074
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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