Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10k05r
         (731 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g54380.1 68414.m06200 spliceosome protein-related contains Pf...    65   4e-11
At2g42510.1 68415.m05261 spliceosome protein-related contains Pf...    36   0.021
At2g25050.1 68415.m02996 formin homology 2 domain-containing pro...    30   1.8  
At4g05380.1 68417.m00820 AAA-type ATPase family protein contains...    29   2.4  
At4g00710.1 68417.m00097 protein kinase family protein low simil...    29   2.4  
At1g58050.1 68414.m06579 helicase domain-containing protein cont...    29   2.4  
At1g35910.1 68414.m04460 trehalose-6-phosphate phosphatase, puta...    28   7.3  

>At1g54380.1 68414.m06200 spliceosome protein-related contains Pfam
           domain, PF04938: Survival motor neuron (SMN) interacting
           protein 1 (SIP1)
          Length = 515

 Score = 65.3 bits (152), Expect = 4e-11
 Identities = 63/220 (28%), Positives = 96/220 (43%), Gaps = 11/220 (5%)
 Frame = -2

Query: 694 PTNGEEYLLKVIKERKNIAAVTKCNKDYSKFAEN-QSQYVHEFPRL-SVPEKLKPTIEWQ 521
           P +G EYL +V  E K I  V     D S + +  QS Y+   P +   PE L P  EW+
Sbjct: 303 PEDGLEYLRRVRWEAKGIPNVRVAKIDESTYIKKEQSVYMPLIPEIPKCPEYLLPMKEWE 362

Query: 520 NMQVADFSETRMYISRLLSKRXXXXXXXXXXXXKPTCVIEWK-QFFSTHIPTLSCVLGLQ 344
           +  + DF   R  +++  +                 CV +   + F+ H+ T       +
Sbjct: 363 DSLLLDFVHLRQTLTQSANS-------CEDEIISSQCVEDLLVEMFNKHLHTEEDESFGE 415

Query: 343 HALLDQGLEVLTDIISRTKPGNTIEHKTG------QWVYAFLACTQLPLLSDTTSILRNL 182
                QG++ +T +    K    +E ++G      +WV A  A  + PL +DT + LR L
Sbjct: 416 VVTDIQGMDSVTRVSKLKKRICLVEKESGLQSSDCKWVVALCASLETPLDADTCACLRGL 475

Query: 181 ARKCAEIRFR--LNPDEENAITAATPLNIFICLVARYFRQ 68
            RKCA +R    L   +E  IT A   N+ I +  RYF Q
Sbjct: 476 LRKCASVRAETSLEVGDEEVITMA---NMLITIAGRYFGQ 512


>At2g42510.1 68415.m05261 spliceosome protein-related contains Pfam
           domain, PF04938: Survival motor neuron (SMN) interacting
           protein 1 (SIP1)
          Length = 646

 Score = 36.3 bits (80), Expect = 0.021
 Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
 Frame = -2

Query: 346 QHALLDQGLEV-LTDIISRTKPGNTIEHKTGQWVYAFLACTQLPLLSDTTSILRNLARKC 170
           ++ L D G++    D+    + G  +E    +WV A  A    P  +DT++ LR L RKC
Sbjct: 545 RNGLSDTGIKAEKADMFGEKESG--LESSDCKWVVALCASVDTPPDADTSACLRALVRKC 602

Query: 169 AEIR 158
           A +R
Sbjct: 603 ASLR 606


>At2g25050.1 68415.m02996 formin homology 2 domain-containing protein
            / FH2 domain-containing protein contains formin homology
            2 domain, Pfam:PF02128
          Length = 1111

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 17/66 (25%), Positives = 34/66 (51%)
 Frame = +3

Query: 15   KIIHYKFLFIKIQSARSYCLKYLATKHINIFKGVAAVIAFSSSGFSLNLISAHFRAKFLR 194
            +++++    + +++A    LKYLA +   I KG+  V+   ++  +   IS HFR     
Sbjct: 964  ELLNFPKDLVSLEAATKIQLKYLAEEMQAISKGLEKVVQEFTASETDGQISKHFRMNLKE 1023

Query: 195  ILVVSD 212
             L V++
Sbjct: 1024 FLSVAE 1029


>At4g05380.1 68417.m00820 AAA-type ATPase family protein contains
           similarity to mitochondrial ATPase (AAA family) Bcs1p,
           Saccharomyces cerevisiae, Swiss Prot:P32839
          Length = 248

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 15/60 (25%), Positives = 34/60 (56%), Gaps = 3/60 (5%)
 Frame = -2

Query: 724 ISPDVQLKEVPTNGEEYLLKVIKERKNIAAVTKC---NKDYSKFAENQSQYVHEFPRLSV 554
           +  D  L+++ T+ E   + +I++     A T C   NKD +++ ENQ++   + P++++
Sbjct: 67  VKDDAMLRQILTSTENRSILLIEDLDCSGADTTCRKENKDETEYGENQNKKKKKDPKVTL 126


>At4g00710.1 68417.m00097 protein kinase family protein low
           similarity to protein kinase [Arabidopsis thaliana]
           GI:2852449; contains Pfam profile: PF00069 Protein
           kinase domain
          Length = 489

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 14/35 (40%), Positives = 22/35 (62%)
 Frame = -2

Query: 211 SDTTSILRNLARKCAEIRFRLNPDEENAITAATPL 107
           SD T ++R LA +C +   R  P+ ++ +TA TPL
Sbjct: 279 SDGTELVR-LASRCLQYEARERPNTKSLVTALTPL 312


>At1g58050.1 68414.m06579 helicase domain-containing protein
           contains similarity to SP|P24785 Dosage compensation
           regulator (Male-less protein) (No action potential
           protein) {Drosophila melanogaster}; contains Pfam
           profiles PF04408: Helicase associated domain (HA2),
           PF00271: Helicase conserved C-terminal domain
          Length = 1417

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 15/54 (27%), Positives = 27/54 (50%)
 Frame = -2

Query: 700 EVPTNGEEYLLKVIKERKNIAAVTKCNKDYSKFAENQSQYVHEFPRLSVPEKLK 539
           E+P N      +     +++A ++K  KD++  AE+  Q V E P   V  ++K
Sbjct: 118 ELPVNFSNGASRFPSTGRSVAVISKSKKDWNVSAESSVQEVKEVPESEVLVRVK 171


>At1g35910.1 68414.m04460 trehalose-6-phosphate phosphatase,
           putative similar to trehalose-6-phosphate phosphatase
           (AtTPPB) [Arabidopsis thaliana] GI:2944180; contains
           Pfam profile PF02358: Trehalose-phosphatase
          Length = 369

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 12/45 (26%), Positives = 26/45 (57%), Gaps = 5/45 (11%)
 Frame = -2

Query: 619 KDYSKFAENQSQYVHEFPRLSVPE-----KLKPTIEWQNMQVADF 500
           KD+   AE+ +  + E+P+L + +     +++PTI+W   +  +F
Sbjct: 246 KDWGLVAEHVTSILSEYPKLRLTQGRKVLEIRPTIKWDKGKALEF 290


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,425,230
Number of Sequences: 28952
Number of extensions: 282768
Number of successful extensions: 752
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 742
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 752
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1604469728
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)