BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= fner10k05f (681 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPAC458.02c |||mRNP complex |Schizosaccharomyces pombe|chr 1|||M... 28 1.1 SPBC29A3.01 |||heavy metal ATPase |Schizosaccharomyces pombe|chr... 28 1.1 SPAC8F11.04 |||U3 snoRNP-associated protein Cic1/Utp30 family |S... 27 2.5 SPAC2G11.06 |vps4||AAA family ATPase Vps4|Schizosaccharomyces po... 27 3.3 SPAC1565.07c |||TATA binding protein interacting protein |Schizo... 27 3.3 SPBC582.08 |||alanine aminotransferase |Schizosaccharomyces pomb... 26 4.4 SPAC17H9.02 |||ATP-dependent RNA helicase Mtr4-like |Schizosacch... 26 5.8 SPCC74.03c |ssp2|ucp9|serine/threonine protein kinase Ssp2|Schiz... 26 5.8 SPAP32A8.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces... 25 7.7 SPAC29B12.13 |||carbon-sulfur lyase |Schizosaccharomyces pombe|c... 25 7.7 >SPAC458.02c |||mRNP complex |Schizosaccharomyces pombe|chr 1|||Manual Length = 468 Score = 28.3 bits (60), Expect = 1.1 Identities = 10/44 (22%), Positives = 24/44 (54%) Frame = +1 Query: 307 KISPDVQLKEVPTNGEEYLLKVIKERKNIAAVTKCNKDYSKFAE 438 ++ D +K++ + LK++ E+K + +++CN+ F E Sbjct: 106 EVELDKHVKQLQAAVDSGTLKIVDEKKYLREISQCNRTRKSFVE 149 >SPBC29A3.01 |||heavy metal ATPase |Schizosaccharomyces pombe|chr 2|||Manual Length = 904 Score = 28.3 bits (60), Expect = 1.1 Identities = 12/38 (31%), Positives = 22/38 (57%) Frame = -2 Query: 368 LSKYSSPFVGTSFNCTSGLILKHGDTISKLSSSSFIVF 255 LS ++ VGT +G+I+K G+ + +L+ +VF Sbjct: 491 LSTPTAVMVGTGVGALNGIIIKGGEILERLNQVDTVVF 528 >SPAC8F11.04 |||U3 snoRNP-associated protein Cic1/Utp30 family |Schizosaccharomyces pombe|chr 1|||Manual Length = 373 Score = 27.1 bits (57), Expect = 2.5 Identities = 19/54 (35%), Positives = 26/54 (48%) Frame = +1 Query: 229 KKMSLKKYLKTMKDDEDNLDIVSPCFKISPDVQLKEVPTNGEEYLLKVIKERKN 390 KK+S+K KT DED+ + K SP V + NG +K +K KN Sbjct: 320 KKLSVKNAAKTTNRDEDSKGKKA---KASPKVSQSSLKANGTT-AIKKVKAGKN 369 >SPAC2G11.06 |vps4||AAA family ATPase Vps4|Schizosaccharomyces pombe|chr 1|||Manual Length = 432 Score = 26.6 bits (56), Expect = 3.3 Identities = 18/82 (21%), Positives = 37/82 (45%), Gaps = 2/82 (2%) Frame = +1 Query: 226 VKKMSLKKYLKTMKDDEDNLDIVSPCFKISPDV-QLKEVPTNGEEYLLKVIKERKNIAAV 402 V+++ + K + D++ N +V+PC PD + + N E+ + + R +AV Sbjct: 347 VRRIHTATHFKEVYDNKSNRTLVTPCSPGDPDAFESSWLEVNPEDIMEPKLTVRDFYSAV 406 Query: 403 TKCNKDYSK-FAENQSQYVHEF 465 K + E +Q+ +F Sbjct: 407 RKVKPTLNAGDIEKHTQFTKDF 428 >SPAC1565.07c |||TATA binding protein interacting protein |Schizosaccharomyces pombe|chr 1|||Manual Length = 1220 Score = 26.6 bits (56), Expect = 3.3 Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 1/38 (2%) Frame = +1 Query: 223 LVKKMSLKKYLKTMKDDEDN-LDIVSPCFKISPDVQLK 333 L K + L+K KT+K D DN LD+V ++ ++LK Sbjct: 1148 LRKIIELRKTEKTLKTDSDNILDLVRSALRVLFTMKLK 1185 >SPBC582.08 |||alanine aminotransferase |Schizosaccharomyces pombe|chr 2|||Manual Length = 505 Score = 26.2 bits (55), Expect = 4.4 Identities = 16/44 (36%), Positives = 24/44 (54%) Frame = +1 Query: 403 TKCNKDYSKFAENQSQYVHEFPRLSVPEKLKPTIEWQNMQVADF 534 TK K S + + Y+H P +S+PEKL T + Q +Q +F Sbjct: 409 TKRMKRVSCLEPHGAMYLH--PSVSLPEKLITTAKAQKIQPDEF 450 >SPAC17H9.02 |||ATP-dependent RNA helicase Mtr4-like |Schizosaccharomyces pombe|chr 1|||Manual Length = 1030 Score = 25.8 bits (54), Expect = 5.8 Identities = 17/51 (33%), Positives = 26/51 (50%) Frame = +1 Query: 364 LKVIKERKNIAAVTKCNKDYSKFAENQSQYVHEFPRLSVPEKLKPTIEWQN 516 L +I+ K IA V+ SK N+S Y+H+F P+ ++P W N Sbjct: 921 LTIIEAAKRIATVSL----ESKLQFNESDYLHQFK----PDIMEPVSLWIN 963 >SPCC74.03c |ssp2|ucp9|serine/threonine protein kinase Ssp2|Schizosaccharomyces pombe|chr 3|||Manual Length = 576 Score = 25.8 bits (54), Expect = 5.8 Identities = 14/55 (25%), Positives = 27/55 (49%) Frame = +1 Query: 367 KVIKERKNIAAVTKCNKDYSKFAENQSQYVHEFPRLSVPEKLKPTIEWQNMQVAD 531 +VI+E+ +++ + + S S+Y E + S E + PT+E V+D Sbjct: 346 QVIQEKSHLSKSKRVDSFLSVSPPAFSEYTSELQKKSKQELIDPTLEGPRWTVSD 400 >SPAP32A8.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces pombe|chr 1|||Manual Length = 513 Score = 25.4 bits (53), Expect = 7.7 Identities = 12/35 (34%), Positives = 20/35 (57%) Frame = +1 Query: 220 NLVKKMSLKKYLKTMKDDEDNLDIVSPCFKISPDV 324 +++ KM ++K K + D+E I FKI+ DV Sbjct: 375 DVIAKMKVQKPPKELIDEEGECTICMEMFKINDDV 409 >SPAC29B12.13 |||carbon-sulfur lyase |Schizosaccharomyces pombe|chr 1|||Manual Length = 137 Score = 25.4 bits (53), Expect = 7.7 Identities = 12/31 (38%), Positives = 19/31 (61%) Frame = -2 Query: 356 SSPFVGTSFNCTSGLILKHGDTISKLSSSSF 264 SSPF+ +F+CT + + + K +SSSF Sbjct: 37 SSPFM--AFSCTQKPSVSENENVGKYASSSF 65 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,612,763 Number of Sequences: 5004 Number of extensions: 50869 Number of successful extensions: 158 Number of sequences better than 10.0: 10 Number of HSP's better than 10.0 without gapping: 153 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 158 length of database: 2,362,478 effective HSP length: 70 effective length of database: 2,012,198 effective search space used: 313902888 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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