Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10k05f
(681 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC458.02c |||mRNP complex |Schizosaccharomyces pombe|chr 1|||M... 28 1.1
SPBC29A3.01 |||heavy metal ATPase |Schizosaccharomyces pombe|chr... 28 1.1
SPAC8F11.04 |||U3 snoRNP-associated protein Cic1/Utp30 family |S... 27 2.5
SPAC2G11.06 |vps4||AAA family ATPase Vps4|Schizosaccharomyces po... 27 3.3
SPAC1565.07c |||TATA binding protein interacting protein |Schizo... 27 3.3
SPBC582.08 |||alanine aminotransferase |Schizosaccharomyces pomb... 26 4.4
SPAC17H9.02 |||ATP-dependent RNA helicase Mtr4-like |Schizosacch... 26 5.8
SPCC74.03c |ssp2|ucp9|serine/threonine protein kinase Ssp2|Schiz... 26 5.8
SPAP32A8.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces... 25 7.7
SPAC29B12.13 |||carbon-sulfur lyase |Schizosaccharomyces pombe|c... 25 7.7
>SPAC458.02c |||mRNP complex |Schizosaccharomyces pombe|chr
1|||Manual
Length = 468
Score = 28.3 bits (60), Expect = 1.1
Identities = 10/44 (22%), Positives = 24/44 (54%)
Frame = +1
Query: 307 KISPDVQLKEVPTNGEEYLLKVIKERKNIAAVTKCNKDYSKFAE 438
++ D +K++ + LK++ E+K + +++CN+ F E
Sbjct: 106 EVELDKHVKQLQAAVDSGTLKIVDEKKYLREISQCNRTRKSFVE 149
>SPBC29A3.01 |||heavy metal ATPase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 904
Score = 28.3 bits (60), Expect = 1.1
Identities = 12/38 (31%), Positives = 22/38 (57%)
Frame = -2
Query: 368 LSKYSSPFVGTSFNCTSGLILKHGDTISKLSSSSFIVF 255
LS ++ VGT +G+I+K G+ + +L+ +VF
Sbjct: 491 LSTPTAVMVGTGVGALNGIIIKGGEILERLNQVDTVVF 528
>SPAC8F11.04 |||U3 snoRNP-associated protein Cic1/Utp30 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 373
Score = 27.1 bits (57), Expect = 2.5
Identities = 19/54 (35%), Positives = 26/54 (48%)
Frame = +1
Query: 229 KKMSLKKYLKTMKDDEDNLDIVSPCFKISPDVQLKEVPTNGEEYLLKVIKERKN 390
KK+S+K KT DED+ + K SP V + NG +K +K KN
Sbjct: 320 KKLSVKNAAKTTNRDEDSKGKKA---KASPKVSQSSLKANGTT-AIKKVKAGKN 369
>SPAC2G11.06 |vps4||AAA family ATPase Vps4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 432
Score = 26.6 bits (56), Expect = 3.3
Identities = 18/82 (21%), Positives = 37/82 (45%), Gaps = 2/82 (2%)
Frame = +1
Query: 226 VKKMSLKKYLKTMKDDEDNLDIVSPCFKISPDV-QLKEVPTNGEEYLLKVIKERKNIAAV 402
V+++ + K + D++ N +V+PC PD + + N E+ + + R +AV
Sbjct: 347 VRRIHTATHFKEVYDNKSNRTLVTPCSPGDPDAFESSWLEVNPEDIMEPKLTVRDFYSAV 406
Query: 403 TKCNKDYSK-FAENQSQYVHEF 465
K + E +Q+ +F
Sbjct: 407 RKVKPTLNAGDIEKHTQFTKDF 428
>SPAC1565.07c |||TATA binding protein interacting protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1220
Score = 26.6 bits (56), Expect = 3.3
Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Frame = +1
Query: 223 LVKKMSLKKYLKTMKDDEDN-LDIVSPCFKISPDVQLK 333
L K + L+K KT+K D DN LD+V ++ ++LK
Sbjct: 1148 LRKIIELRKTEKTLKTDSDNILDLVRSALRVLFTMKLK 1185
>SPBC582.08 |||alanine aminotransferase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 505
Score = 26.2 bits (55), Expect = 4.4
Identities = 16/44 (36%), Positives = 24/44 (54%)
Frame = +1
Query: 403 TKCNKDYSKFAENQSQYVHEFPRLSVPEKLKPTIEWQNMQVADF 534
TK K S + + Y+H P +S+PEKL T + Q +Q +F
Sbjct: 409 TKRMKRVSCLEPHGAMYLH--PSVSLPEKLITTAKAQKIQPDEF 450
>SPAC17H9.02 |||ATP-dependent RNA helicase Mtr4-like
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1030
Score = 25.8 bits (54), Expect = 5.8
Identities = 17/51 (33%), Positives = 26/51 (50%)
Frame = +1
Query: 364 LKVIKERKNIAAVTKCNKDYSKFAENQSQYVHEFPRLSVPEKLKPTIEWQN 516
L +I+ K IA V+ SK N+S Y+H+F P+ ++P W N
Sbjct: 921 LTIIEAAKRIATVSL----ESKLQFNESDYLHQFK----PDIMEPVSLWIN 963
>SPCC74.03c |ssp2|ucp9|serine/threonine protein kinase
Ssp2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 576
Score = 25.8 bits (54), Expect = 5.8
Identities = 14/55 (25%), Positives = 27/55 (49%)
Frame = +1
Query: 367 KVIKERKNIAAVTKCNKDYSKFAENQSQYVHEFPRLSVPEKLKPTIEWQNMQVAD 531
+VI+E+ +++ + + S S+Y E + S E + PT+E V+D
Sbjct: 346 QVIQEKSHLSKSKRVDSFLSVSPPAFSEYTSELQKKSKQELIDPTLEGPRWTVSD 400
>SPAP32A8.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 513
Score = 25.4 bits (53), Expect = 7.7
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = +1
Query: 220 NLVKKMSLKKYLKTMKDDEDNLDIVSPCFKISPDV 324
+++ KM ++K K + D+E I FKI+ DV
Sbjct: 375 DVIAKMKVQKPPKELIDEEGECTICMEMFKINDDV 409
>SPAC29B12.13 |||carbon-sulfur lyase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 137
Score = 25.4 bits (53), Expect = 7.7
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = -2
Query: 356 SSPFVGTSFNCTSGLILKHGDTISKLSSSSF 264
SSPF+ +F+CT + + + K +SSSF
Sbjct: 37 SSPFM--AFSCTQKPSVSENENVGKYASSSF 65
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,612,763
Number of Sequences: 5004
Number of extensions: 50869
Number of successful extensions: 158
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 313902888
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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