Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10k05f
(681 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_03_0136 + 10591247-10591352,10591463-10591712,10595401-105955... 44 1e-04
08_01_0914 + 9010613-9013316,9013537-9013748 33 0.16
08_02_1063 + 24024030-24024506,24024803-24024856,24024965-240251... 33 0.21
11_03_0150 + 10810322-10810380,10810530-10810593,10810803-108110... 32 0.37
04_04_1525 - 34156813-34157058,34157245-34157435,34157885-341579... 30 2.0
01_06_1513 - 37884198-37884485,37884966-37886951,37886976-378873... 29 2.6
06_03_0899 - 25776159-25776797,25776898-25777806,25779425-257795... 28 6.0
08_01_0048 + 335868-336682,338382-340386 28 7.9
07_03_0004 - 12260322-12261432,12261691-12261821,12262386-122624... 28 7.9
>11_03_0136 +
10591247-10591352,10591463-10591712,10595401-10595578,
10596741-10597136
Length = 309
Score = 44.0 bits (99), Expect = 1e-04
Identities = 32/103 (31%), Positives = 49/103 (47%), Gaps = 4/103 (3%)
Frame = +1
Query: 268 DDEDNLD-IVSPCFKIS--PDVQLKEVPTNGEEYLLKVIKERKNIAAVTKCNKDYSKFAE 438
D +D+ D I+ P F + PD + E P +G EYL +V E I V D +
Sbjct: 82 DSDDDYDGILKPAFAVDGDPDFESGE-PLDGFEYLRRVRWEANQIPRVKVAKIDLNTARN 140
Query: 439 NQSQYVHEFPRLS-VPEKLKPTIEWQNMQVADFSETRMYISRL 564
Q+ Y+ E P ++ L + W++ + FSETR+ S L
Sbjct: 141 EQTPYMPEIPDIAKCSPDLCASKPWEDTFITYFSETRLAFSEL 183
>08_01_0914 + 9010613-9013316,9013537-9013748
Length = 971
Score = 33.5 bits (73), Expect = 0.16
Identities = 22/91 (24%), Positives = 41/91 (45%), Gaps = 3/91 (3%)
Frame = +1
Query: 22 NKTAFPITRMKL*KNIVQIISVNNYEYCCTG--YISF-DCLNRQNKSIIY*SLHIYVL*I 192
NK + P+ + +N+ ++ + N + C G Y+ F C + LH+ + I
Sbjct: 605 NKLSGPVPNTGIFRNVTIVLLLGN-KMLCGGPPYMQFPSCSYEDSDQASVHRLHVLIFCI 663
Query: 193 VNVIISQSCNLVKKMSLKKYLKTMKDDEDNL 285
V +IS C + +K+ +K D +NL
Sbjct: 664 VGTLISSMCCMTAYCFIKRKMKLNVVDNENL 694
>08_02_1063 +
24024030-24024506,24024803-24024856,24024965-24025118,
24025314-24025388,24025511-24025788,24026023-24026253,
24026522-24026620,24026740-24026889,24027830-24027976,
24028525-24028575,24028647-24028819,24029018-24029147,
24029361-24029458,24029655-24029892,24030634-24030837,
24031003-24031083,24031296-24031535
Length = 959
Score = 33.1 bits (72), Expect = 0.21
Identities = 16/38 (42%), Positives = 22/38 (57%)
Frame = -2
Query: 368 LSKYSSPFVGTSFNCTSGLILKHGDTISKLSSSSFIVF 255
L+ ++ VGTS T GL+L+ GD + K S IVF
Sbjct: 565 LATPTAVLVGTSLGATRGLLLRGGDILEKFSEVDAIVF 602
>11_03_0150 +
10810322-10810380,10810530-10810593,10810803-10811047,
10811627-10811747,10811821-10811895,10811986-10812112,
10812194-10812939,10813065-10813195,10813547-10813636,
10814000-10814105
Length = 587
Score = 32.3 bits (70), Expect = 0.37
Identities = 23/75 (30%), Positives = 33/75 (44%)
Frame = +1
Query: 202 IISQSCNLVKKMSLKKYLKTMKDDEDNLDIVSPCFKISPDVQLKEVPTNGEEYLLKVIKE 381
+ISQ + ++ SLK+ T D P K P + TNG + K++ E
Sbjct: 134 VISQRV-IEERKSLKELQNTASMSRDR----RPSAKEIPSSSKVQSKTNGHHHKQKIVNE 188
Query: 382 RKNIAAVTKCNKDYS 426
K A K N+DYS
Sbjct: 189 AKRKAEALKDNRDYS 203
>04_04_1525 -
34156813-34157058,34157245-34157435,34157885-34157956,
34158351-34158419,34158531-34158639,34158872-34158987,
34159117-34159210,34159289-34159460,34159545-34159669
Length = 397
Score = 29.9 bits (64), Expect = 2.0
Identities = 28/128 (21%), Positives = 54/128 (42%)
Frame = -2
Query: 614 FYFYNINIVFHIFLFDSKRDMYIRVSEKSATCMFCHSIVGFNFSGTDSLGNSCTY*D*FS 435
F F ++ ++ F + + D YI+V + F H ++ + LG + + D F
Sbjct: 130 FAFISVLHMYETFGWWRRAD-YIKVHFAESWNEFHHLLI------MEELGGNSLWVDRFL 182
Query: 434 ANFE*SLLHFVTAAMFLRSFMTLSKYSSPFVGTSFNCTSGLILKHGDTISKLSSSSFIVF 255
A F +F+T AM++ S +S +++ I H D + KL + +
Sbjct: 183 ARFAAFFYYFMTVAMYMVSPRMAYHFSECVERHAYSTYDKFIKLHEDELKKLPAPEAALN 242
Query: 254 KYFFNDIF 231
Y D++
Sbjct: 243 YYLNEDLY 250
>01_06_1513 -
37884198-37884485,37884966-37886951,37886976-37887305,
37887397-37887471,37887543-37887734,37887922-37888173,
37888248-37888803,37888881-37889088,37889624-37889736,
37890029-37890060,37890545-37890619
Length = 1368
Score = 29.5 bits (63), Expect = 2.6
Identities = 12/43 (27%), Positives = 24/43 (55%)
Frame = +1
Query: 313 SPDVQLKEVPTNGEEYLLKVIKERKNIAAVTKCNKDYSKFAEN 441
SPD+ L+ +P+ E L ++ +E + + +C++ S A N
Sbjct: 543 SPDLSLENLPSKQNEVLTEISEEPATLDGMLECSRSGSSQASN 585
>06_03_0899 -
25776159-25776797,25776898-25777806,25779425-25779592,
25779703-25779890,25779993-25780137,25780566-25780775
Length = 752
Score = 28.3 bits (60), Expect = 6.0
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = +1
Query: 286 DIVSPCFKISPDVQLKEVPTNGEEYLLKVIKE 381
++VSP K+ D+ +P+NG E+ V+KE
Sbjct: 113 EVVSP--KVESDLSAMNIPSNGSEWAELVVKE 142
>08_01_0048 + 335868-336682,338382-340386
Length = 939
Score = 27.9 bits (59), Expect = 7.9
Identities = 12/34 (35%), Positives = 21/34 (61%)
Frame = -2
Query: 371 TLSKYSSPFVGTSFNCTSGLILKHGDTISKLSSS 270
TL+KY +G F+CT+ + + H I+++ SS
Sbjct: 207 TLAKYVYDKIGHQFDCTAFVSVSHKPDITRILSS 240
>07_03_0004 -
12260322-12261432,12261691-12261821,12262386-12262491,
12262777-12262875,12262960-12263312,12263593-12263619
Length = 608
Score = 27.9 bits (59), Expect = 7.9
Identities = 25/76 (32%), Positives = 36/76 (47%), Gaps = 3/76 (3%)
Frame = +1
Query: 190 IVNVIISQSCNLVKKMSLKKYLKTMKDDE-DNLDIVSPCFKISPDVQLKEVPTNGEEYLL 366
I NV + SCNL + + + Y+ T K+DE LD++ D +KE N L
Sbjct: 5 ITNVQVCSSCNL-RNLCSRGYILTRKEDEARTLDVMRILLFYGFD-HVKETVENKPLLKL 62
Query: 367 KVIKE--RKNIAAVTK 408
K +K RK I + K
Sbjct: 63 KSVKTVVRKLIHDIAK 78
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,827,211
Number of Sequences: 37544
Number of extensions: 255260
Number of successful extensions: 545
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 538
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 544
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1721314888
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -