BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= fner10k05f (681 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_29927| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.37 SB_43644| Best HMM Match : SH3_1 (HMM E-Value=0) 28 6.1 SB_21019| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.0 >SB_29927| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 820 Score = 32.3 bits (70), Expect = 0.37 Identities = 26/93 (27%), Positives = 44/93 (47%), Gaps = 3/93 (3%) Frame = +1 Query: 292 VSPCFKISPDVQLKEVPTNGEEYLLKVIKERKNIAAV---TKCNKDYSKFAENQSQYVHE 462 +SPC++ S +L+E +E ++K I+E I + T D+SK S++ Sbjct: 569 LSPCYRFSWSTELEEAFQASKEEIVKAIREGVEIFDIQKRTSLRPDWSKRGIGYSRF--- 625 Query: 463 FPRLSVPEKLKPTIEWQNMQVADFSETRMYISR 561 LS PE+ IE + + VA E Y ++ Sbjct: 626 ---LSPPEQRYAAIEGEALAVAWGLEQTCYFTQ 655 >SB_43644| Best HMM Match : SH3_1 (HMM E-Value=0) Length = 704 Score = 28.3 bits (60), Expect = 6.1 Identities = 15/50 (30%), Positives = 28/50 (56%) Frame = +1 Query: 319 DVQLKEVPTNGEEYLLKVIKERKNIAAVTKCNKDYSKFAENQSQYVHEFP 468 DVQ +++P+ Y++ V ++ V + YSKF + Q++ + EFP Sbjct: 13 DVQKRKIPSKHYVYVISVTWSDGSVNVVYR---RYSKFFDLQTKLLEEFP 59 >SB_21019| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 135 Score = 27.9 bits (59), Expect = 8.0 Identities = 11/25 (44%), Positives = 18/25 (72%) Frame = +1 Query: 466 PRLSVPEKLKPTIEWQNMQVADFSE 540 P+L PE+L+P I+ N+QV + +E Sbjct: 6 PKLFTPEELQPVIDAINLQVDELAE 30 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 18,406,759 Number of Sequences: 59808 Number of extensions: 343094 Number of successful extensions: 728 Number of sequences better than 10.0: 3 Number of HSP's better than 10.0 without gapping: 665 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 721 length of database: 16,821,457 effective HSP length: 80 effective length of database: 12,036,817 effective search space used: 1757375282 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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