Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10k05f
(681 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC104968-1|AAI04969.1| 280|Homo sapiens survival of motor neuro... 41 0.004
AJ250932-1|CAC16117.2| 269|Homo sapiens survival interacting pr... 41 0.004
AF027150-1|AAB82297.1| 280|Homo sapiens survival of motor neuro... 41 0.004
AB037702-1|BAB03509.1| 250|Homo sapiens SMN interacting protein... 41 0.004
AB037701-1|BAB03508.1| 265|Homo sapiens SMN interacting protein... 41 0.004
AL357564-3|CAI20974.1| 5183|Homo sapiens ubiquitin protein ligas... 33 0.94
AL137127-5|CAI19272.1| 5183|Homo sapiens ubiquitin protein ligas... 33 0.94
AF348492-1|AAL83880.1| 5183|Homo sapiens p600 protein. 33 0.94
AJ320497-1|CAC60121.1| 4523|Homo sapiens axonemal beta heavy cha... 30 8.8
AC005078-1|AAC78616.2| 1020|Homo sapiens Homo sapiens dynein, ax... 30 8.8
>BC104968-1|AAI04969.1| 280|Homo sapiens survival of motor neuron
protein interacting protein 1 protein.
Length = 280
Score = 41.1 bits (92), Expect = 0.004
Identities = 26/90 (28%), Positives = 36/90 (40%)
Frame = +1
Query: 292 VSPCFKISPDVQLKEVPTNGEEYLLKVIKERKNIAAVTKCNKDYSKFAENQSQYVHEFPR 471
V PC ++ P +EYL +V E V D K QS +
Sbjct: 31 VEPC-DLTEGFDPSVPPRTPQEYLRRVQIEAAQCPDVVVAQIDPKKLKRKQSVNISLSGC 89
Query: 472 LSVPEKLKPTIEWQNMQVADFSETRMYISR 561
PE PT++WQ QVA FS R +++
Sbjct: 90 QPAPEGYSPTLQWQQQQVAQFSTVRQNVNK 119
>AJ250932-1|CAC16117.2| 269|Homo sapiens survival interacting
protein 1 protein.
Length = 269
Score = 41.1 bits (92), Expect = 0.004
Identities = 26/90 (28%), Positives = 36/90 (40%)
Frame = +1
Query: 292 VSPCFKISPDVQLKEVPTNGEEYLLKVIKERKNIAAVTKCNKDYSKFAENQSQYVHEFPR 471
V PC ++ P +EYL +V E V D K QS +
Sbjct: 20 VEPC-DLTEGFDPSVPPRTPQEYLRRVQIEAAQCPDVVVAQIDPKKLKRKQSVNISLSGC 78
Query: 472 LSVPEKLKPTIEWQNMQVADFSETRMYISR 561
PE PT++WQ QVA FS R +++
Sbjct: 79 QPAPEGYSPTLQWQQQQVAQFSTVRQNVNK 108
>AF027150-1|AAB82297.1| 280|Homo sapiens survival of motor neuron
protein interacting protein 1 protein.
Length = 280
Score = 41.1 bits (92), Expect = 0.004
Identities = 26/90 (28%), Positives = 36/90 (40%)
Frame = +1
Query: 292 VSPCFKISPDVQLKEVPTNGEEYLLKVIKERKNIAAVTKCNKDYSKFAENQSQYVHEFPR 471
V PC ++ P +EYL +V E V D K QS +
Sbjct: 31 VEPC-DLTEGFDPSVPPRTPQEYLRRVQIEAAQCPDVVVAQIDPKKLKRKQSVNISLSGC 89
Query: 472 LSVPEKLKPTIEWQNMQVADFSETRMYISR 561
PE PT++WQ QVA FS R +++
Sbjct: 90 QPAPEGYSPTLQWQQQQVAQFSTVRQNVNK 119
>AB037702-1|BAB03509.1| 250|Homo sapiens SMN interacting protein
1-gamma protein.
Length = 250
Score = 41.1 bits (92), Expect = 0.004
Identities = 26/90 (28%), Positives = 36/90 (40%)
Frame = +1
Query: 292 VSPCFKISPDVQLKEVPTNGEEYLLKVIKERKNIAAVTKCNKDYSKFAENQSQYVHEFPR 471
V PC ++ P +EYL +V E V D K QS +
Sbjct: 31 VEPC-DLTEGFDPSVPPRTPQEYLRRVQIEAAQCPDVVVAQIDPKKLKRKQSVNISLSGC 89
Query: 472 LSVPEKLKPTIEWQNMQVADFSETRMYISR 561
PE PT++WQ QVA FS R +++
Sbjct: 90 QPAPEGYSPTLQWQQQQVAQFSTVRQNVNK 119
>AB037701-1|BAB03508.1| 265|Homo sapiens SMN interacting
protein1-beta protein.
Length = 265
Score = 41.1 bits (92), Expect = 0.004
Identities = 26/90 (28%), Positives = 36/90 (40%)
Frame = +1
Query: 292 VSPCFKISPDVQLKEVPTNGEEYLLKVIKERKNIAAVTKCNKDYSKFAENQSQYVHEFPR 471
V PC ++ P +EYL +V E V D K QS +
Sbjct: 31 VEPC-DLTEGFDPSVPPRTPQEYLRRVQIEAAQCPDVVVAQIDPKKLKRKQSVNISLSGC 89
Query: 472 LSVPEKLKPTIEWQNMQVADFSETRMYISR 561
PE PT++WQ QVA FS R +++
Sbjct: 90 QPAPEGYSPTLQWQQQQVAQFSTVRQNVNK 119
>AL357564-3|CAI20974.1| 5183|Homo sapiens ubiquitin protein ligase
E3 component n-recognin 4 protein.
Length = 5183
Score = 33.1 bits (72), Expect = 0.94
Identities = 18/54 (33%), Positives = 29/54 (53%)
Frame = +1
Query: 223 LVKKMSLKKYLKTMKDDEDNLDIVSPCFKISPDVQLKEVPTNGEEYLLKVIKER 384
++K L + +KT+ D ED ++ SP +SP+++ KEV N L V R
Sbjct: 154 MMKSAKLPQTVKTLSDVEDQKELASP---VSPELRQKEVQMNFLNQLTSVFNPR 204
>AL137127-5|CAI19272.1| 5183|Homo sapiens ubiquitin protein ligase
E3 component n-recognin 4 protein.
Length = 5183
Score = 33.1 bits (72), Expect = 0.94
Identities = 18/54 (33%), Positives = 29/54 (53%)
Frame = +1
Query: 223 LVKKMSLKKYLKTMKDDEDNLDIVSPCFKISPDVQLKEVPTNGEEYLLKVIKER 384
++K L + +KT+ D ED ++ SP +SP+++ KEV N L V R
Sbjct: 154 MMKSAKLPQTVKTLSDVEDQKELASP---VSPELRQKEVQMNFLNQLTSVFNPR 204
>AF348492-1|AAL83880.1| 5183|Homo sapiens p600 protein.
Length = 5183
Score = 33.1 bits (72), Expect = 0.94
Identities = 18/54 (33%), Positives = 29/54 (53%)
Frame = +1
Query: 223 LVKKMSLKKYLKTMKDDEDNLDIVSPCFKISPDVQLKEVPTNGEEYLLKVIKER 384
++K L + +KT+ D ED ++ SP +SP+++ KEV N L V R
Sbjct: 154 MMKSAKLPQTVKTLSDVEDQKELASP---VSPELRQKEVQMNFLNQLTSVFNPR 204
>AJ320497-1|CAC60121.1| 4523|Homo sapiens axonemal beta heavy chain
dynein type 11 protein.
Length = 4523
Score = 29.9 bits (64), Expect = 8.8
Identities = 17/53 (32%), Positives = 22/53 (41%), Gaps = 1/53 (1%)
Frame = -2
Query: 605 YN-INIVFHIFLFDSKRDMYIRVSEKSATCMFCHSIVGFNFSGTDSLGNSCTY 450
YN +N H+ LF+ R+S T C +VG SG SL Y
Sbjct: 2825 YNELNAAMHLVLFEDAMQHVCRISRILRTPQGCALLVGVGGSGKQSLSRLAAY 2877
>AC005078-1|AAC78616.2| 1020|Homo sapiens Homo sapiens dynein,
axonemal, heavy polypeptide 11 (DNAH11) protein.
Length = 1020
Score = 29.9 bits (64), Expect = 8.8
Identities = 17/53 (32%), Positives = 22/53 (41%), Gaps = 1/53 (1%)
Frame = -2
Query: 605 YN-INIVFHIFLFDSKRDMYIRVSEKSATCMFCHSIVGFNFSGTDSLGNSCTY 450
YN +N H+ LF+ R+S T C +VG SG SL Y
Sbjct: 804 YNELNAAMHLVLFEDAMQHVCRISRILRTPQGCALLVGVGGSGKQSLSRLAAY 856
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 83,421,420
Number of Sequences: 237096
Number of extensions: 1527084
Number of successful extensions: 9863
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 9781
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9860
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 7727256732
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -