Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10k05f
         (681 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024765-6|AAF60526.2|  254|Caenorhabditis elegans Smn (survival...    33   0.19 
U39851-2|AAF99874.1|  540|Caenorhabditis elegans Hypothetical pr...    29   4.1  
U88181-2|AAB42303.1|  491|Caenorhabditis elegans Dnaj domain (pr...    28   5.4  
AL132876-17|CAC48140.1|  934|Caenorhabditis elegans Hypothetical...    28   7.1  
AF024492-4|AAF98617.1|  848|Caenorhabditis elegans Hypothetical ...    28   7.1  
AC006834-8|AAF40006.1|  865|Caenorhabditis elegans Hypothetical ...    28   7.1  
U58760-4|AAK31462.2|  678|Caenorhabditis elegans Hypothetical pr...    27   9.4  

>AC024765-6|AAF60526.2|  254|Caenorhabditis elegans Smn (survival of
           motor neuron)protein interactor protein 1, isoform a
           protein.
          Length = 254

 Score = 33.1 bits (72), Expect = 0.19
 Identities = 24/94 (25%), Positives = 44/94 (46%), Gaps = 9/94 (9%)
 Frame = +1

Query: 319 DVQLKEVPTNGEEYLLKVIKER---KNIAAVTKCNKDY-SKFAENQSQYVH-----EFPR 471
           DV +     +  +YL ++  ER   KN+  + + + D  S  A+ Q Q++      E  +
Sbjct: 17  DVDMTSPAMSAAQYLRQMQAERRGTKNVVRIAQKSPDSTSPEAKKQKQWLESVGYQEVKK 76

Query: 472 LSVPEKLKPTIEWQNMQVADFSETRMYISRLLSK 573
           +  P  L P+ EW+  +   F ETR  ++  + K
Sbjct: 77  IETPSPLIPSEEWRQEKCRKFEETRAKMALKIEK 110


>U39851-2|AAF99874.1|  540|Caenorhabditis elegans Hypothetical
           protein C23G10.6 protein.
          Length = 540

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 19/78 (24%), Positives = 36/78 (46%)
 Frame = +1

Query: 205 ISQSCNLVKKMSLKKYLKTMKDDEDNLDIVSPCFKISPDVQLKEVPTNGEEYLLKVIKER 384
           IS +   +K   L  +   + D  +N  ++S        V+   +P + +  +LKVIK  
Sbjct: 281 ISVNMGKIKSQKLDDHWDVILDQRNNNMLIS----FGSMVKSSTMPIDWKMNILKVIKSE 336

Query: 385 KNIAAVTKCNKDYSKFAE 438
            N+  + K   + +KFA+
Sbjct: 337 PNVTFIWKYETNDTKFAD 354


>U88181-2|AAB42303.1|  491|Caenorhabditis elegans Dnaj domain
           (prokaryotic heat shockprotein) protein 7 protein.
          Length = 491

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 15/49 (30%), Positives = 31/49 (63%)
 Frame = +1

Query: 175 IYVL*IVNVIISQSCNLVKKMSLKKYLKTMKDDEDNLDIVSPCFKISPD 321
           I+ + IV+ + + S + + + S  K L T+ D E++L+++  C K++PD
Sbjct: 194 IHDMRIVSKLSTDSTDTMFETS--KLLYTVGDLEESLNVIRECLKLNPD 240


>AL132876-17|CAC48140.1|  934|Caenorhabditis elegans Hypothetical
           protein Y105E8A.21 protein.
          Length = 934

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 17/70 (24%), Positives = 29/70 (41%)
 Frame = +1

Query: 304 FKISPDVQLKEVPTNGEEYLLKVIKERKNIAAVTKCNKDYSKFAENQSQYVHEFPRLSVP 483
           +K  PD   K      + Y L  + + K I     C+K+Y+    N    ++   R  V 
Sbjct: 188 YKNRPDDFRKLSKKAKQAYTLDAVTKNKGIVKCLVCDKEYT----NHMSIIYHIDRCQVD 243

Query: 484 EKLKPTIEWQ 513
           + L+P   W+
Sbjct: 244 KSLQPWKCWR 253


>AF024492-4|AAF98617.1|  848|Caenorhabditis elegans Hypothetical
           protein F14F9.3 protein.
          Length = 848

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 4/61 (6%)
 Frame = +1

Query: 355 EYLLKVIKERKNI-AAVTKCNKDY---SKFAENQSQYVHEFPRLSVPEKLKPTIEWQNMQ 522
           EYL K I +  +I  A++K   +     +  E  S     F R ++PE  K + EW+N  
Sbjct: 370 EYLQKKISKELSIHKAISKITTEMLTNKRIVETMSMASKFFGRKTLPEFFKDSNEWENQL 429

Query: 523 V 525
           V
Sbjct: 430 V 430


>AC006834-8|AAF40006.1|  865|Caenorhabditis elegans Hypothetical
           protein ZK973.2 protein.
          Length = 865

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 10/30 (33%), Positives = 19/30 (63%)
 Frame = +1

Query: 241 LKKYLKTMKDDEDNLDIVSPCFKISPDVQL 330
           +KK++KTM+D +   DI+  C ++   + L
Sbjct: 601 IKKHIKTMQDAQIKSDIIQTCERLHGQISL 630


>U58760-4|AAK31462.2|  678|Caenorhabditis elegans Hypothetical
           protein C27A2.4 protein.
          Length = 678

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 19/71 (26%), Positives = 33/71 (46%)
 Frame = +1

Query: 361 LLKVIKERKNIAAVTKCNKDYSKFAENQSQYVHEFPRLSVPEKLKPTIEWQNMQVADFSE 540
           + K ++E KNI    K N  +SK +E+  + ++      +P+ L+   E QN       +
Sbjct: 156 MAKNLEEYKNIVEHPKVNSLFSKLSEHTGEVINADNFWRIPDTLR--CEKQNFPCEFEKK 213

Query: 541 TRMYISRLLSK 573
           T  Y   LL +
Sbjct: 214 TPWYSEGLLDE 224


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,231,678
Number of Sequences: 27780
Number of extensions: 279611
Number of successful extensions: 795
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 778
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 795
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1550199966
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)