Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10k05f
         (681 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g33520.3 68417.m04762 metal-transporting P-type ATPase, putat...    29   2.2  
At4g33520.2 68417.m04761 metal-transporting P-type ATPase, putat...    29   2.2  
At4g05380.1 68417.m00820 AAA-type ATPase family protein contains...    29   2.2  
At1g58050.1 68414.m06579 helicase domain-containing protein cont...    29   2.2  
At3g10970.2 68416.m01323 haloacid dehalogenase-like hydrolase fa...    29   3.8  
At5g44790.1 68418.m05491 copper-exporting ATPase / responsive-to...    28   5.0  
At1g35910.1 68414.m04460 trehalose-6-phosphate phosphatase, puta...    28   6.6  
At5g54140.1 68418.m06740 IAA-amino acid hydrolase, putative (ILL...    27   8.7  
At4g15640.1 68417.m02384 expressed protein                             27   8.7  

>At4g33520.3 68417.m04762 metal-transporting P-type ATPase, putative
           (PAA1) nearly identical to gi:2668492; contains Pfam
           heavy-metal-associated domain PF00403
          Length = 949

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = -2

Query: 368 LSKYSSPFVGTSFNCTSGLILKHGDTISKLSSSSFIVF 255
           L+  ++  VGTS     GL+L+ GD + K S    +VF
Sbjct: 560 LATPTAMLVGTSLGARRGLLLRGGDILEKFSLVDTVVF 597


>At4g33520.2 68417.m04761 metal-transporting P-type ATPase, putative
           (PAA1) nearly identical to gi:2668492; contains Pfam
           heavy-metal-associated domain PF00403
          Length = 949

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = -2

Query: 368 LSKYSSPFVGTSFNCTSGLILKHGDTISKLSSSSFIVF 255
           L+  ++  VGTS     GL+L+ GD + K S    +VF
Sbjct: 560 LATPTAMLVGTSLGARRGLLLRGGDILEKFSLVDTVVF 597


>At4g05380.1 68417.m00820 AAA-type ATPase family protein contains
           similarity to mitochondrial ATPase (AAA family) Bcs1p,
           Saccharomyces cerevisiae, Swiss Prot:P32839
          Length = 248

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 15/60 (25%), Positives = 34/60 (56%), Gaps = 3/60 (5%)
 Frame = +1

Query: 310 ISPDVQLKEVPTNGEEYLLKVIKERKNIAAVTKC---NKDYSKFAENQSQYVHEFPRLSV 480
           +  D  L+++ T+ E   + +I++     A T C   NKD +++ ENQ++   + P++++
Sbjct: 67  VKDDAMLRQILTSTENRSILLIEDLDCSGADTTCRKENKDETEYGENQNKKKKKDPKVTL 126


>At1g58050.1 68414.m06579 helicase domain-containing protein
           contains similarity to SP|P24785 Dosage compensation
           regulator (Male-less protein) (No action potential
           protein) {Drosophila melanogaster}; contains Pfam
           profiles PF04408: Helicase associated domain (HA2),
           PF00271: Helicase conserved C-terminal domain
          Length = 1417

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 15/54 (27%), Positives = 27/54 (50%)
 Frame = +1

Query: 334 EVPTNGEEYLLKVIKERKNIAAVTKCNKDYSKFAENQSQYVHEFPRLSVPEKLK 495
           E+P N      +     +++A ++K  KD++  AE+  Q V E P   V  ++K
Sbjct: 118 ELPVNFSNGASRFPSTGRSVAVISKSKKDWNVSAESSVQEVKEVPESEVLVRVK 171


>At3g10970.2 68416.m01323 haloacid dehalogenase-like hydrolase
           family protein low similarity to genetic modifier [Zea
           mays] GI:10444400; contains InterPro accession
           IPR005834: Haloacid dehalogenase-like hydrolase
          Length = 365

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 13/42 (30%), Positives = 26/42 (61%)
 Frame = +1

Query: 220 NLVKKMSLKKYLKTMKDDEDNLDIVSPCFKISPDVQLKEVPT 345
           N +++M L+KY + M  +ED ++ ++  F +S  V+L   P+
Sbjct: 239 NALERMGLQKYFQAMVSEEDGMESIAHRF-LSAAVKLDRKPS 279


>At5g44790.1 68418.m05491 copper-exporting ATPase /
           responsive-to-antagonist 1 / copper-transporting ATPase
           (RAN1) identical to SP|Q9S7J8
          Length = 1001

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 16/60 (26%), Positives = 29/60 (48%), Gaps = 8/60 (13%)
 Frame = -2

Query: 410 HFVTAAMFLRSFMT--------LSKYSSPFVGTSFNCTSGLILKHGDTISKLSSSSFIVF 255
           HFV + MF  S +         L+  ++  V T    T+G+++K GD + K     +++F
Sbjct: 598 HFVFSLMFSISVVVIACPCALGLATPTAVMVATGVGATNGVLIKGGDALEKAHKVKYVIF 657


>At1g35910.1 68414.m04460 trehalose-6-phosphate phosphatase,
           putative similar to trehalose-6-phosphate phosphatase
           (AtTPPB) [Arabidopsis thaliana] GI:2944180; contains
           Pfam profile PF02358: Trehalose-phosphatase
          Length = 369

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 12/45 (26%), Positives = 26/45 (57%), Gaps = 5/45 (11%)
 Frame = +1

Query: 415 KDYSKFAENQSQYVHEFPRLSVPE-----KLKPTIEWQNMQVADF 534
           KD+   AE+ +  + E+P+L + +     +++PTI+W   +  +F
Sbjct: 246 KDWGLVAEHVTSILSEYPKLRLTQGRKVLEIRPTIKWDKGKALEF 290


>At5g54140.1 68418.m06740 IAA-amino acid hydrolase, putative (ILL3)
           identical to IAA-amino acid hydrolase homolog ILL3
           [Arabidopsis thaliana] gi|3420801|gb|AAC31939
          Length = 428

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 26/93 (27%), Positives = 41/93 (44%), Gaps = 14/93 (15%)
 Frame = +1

Query: 262 MKDDEDNLDIVSPCFKISPDVQLKEVPTNGEEYLLKVIKE-RKNIAAVTKCNKDYSKFAE 438
           MK      D++ P + +     L+ + TNG  +L+K +KE  +  A V +C  D     +
Sbjct: 263 MKSGGSEFDVI-PAY-VEFGGTLRSLTTNGINWLIKRLKEVVEGQAEVQRCKADIDMHED 320

Query: 439 NQSQY--------VHEFPR-----LSVPEKLKP 498
           +   Y        +HEF       L  PEK+KP
Sbjct: 321 DHPMYPATVNDHKLHEFTEKVLKLLLGPEKVKP 353


>At4g15640.1 68417.m02384 expressed protein
          Length = 390

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 18/49 (36%), Positives = 25/49 (51%)
 Frame = -2

Query: 404 VTAAMFLRSFMTLSKYSSPFVGTSFNCTSGLILKHGDTISKLSSSSFIV 258
           VT    LR F + S+ S  F   S   +S  +LK  D+ S LSS S ++
Sbjct: 18  VTTETNLRFFSSASQISRSFQWRSQASSSSSVLKGIDSSSHLSSMSLLI 66


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,908,184
Number of Sequences: 28952
Number of extensions: 238293
Number of successful extensions: 601
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 584
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 601
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1438152744
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)