Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10k04r
         (748 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

S78459-1|AAB34403.1|   50|Apis mellifera mast cell-degranulating...    26   0.43 
DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    23   3.0  
AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.                23   3.0  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    22   5.3  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    22   5.3  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    22   7.0  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    22   7.0  
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           21   9.3  

>S78459-1|AAB34403.1|   50|Apis mellifera mast cell-degranulating
           peptide protein.
          Length = 50

 Score = 25.8 bits (54), Expect = 0.43
 Identities = 11/26 (42%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
 Frame = +1

Query: 76  TSYILILISVKDYFII-TMRFKCTCK 150
           T + L +I +  YF+  TM  KC CK
Sbjct: 8   TFFFLSVILITSYFVTPTMSIKCNCK 33


>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 499

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = +3

Query: 504 MNLVPFGRGHFDCSSSRFNIH 566
           M+ +PFG G  +C  +RF ++
Sbjct: 432 MHYLPFGDGPRNCIGARFAVY 452


>AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.
          Length = 316

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 7/19 (36%), Positives = 15/19 (78%)
 Frame = +1

Query: 565 IFFVQLPFSGVHAYFLVVL 621
           + F +LPF+G+H++ ++ L
Sbjct: 247 MLFRKLPFAGLHSHTIIYL 265


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = -2

Query: 573 EENEY*SGMKNSRSVLGRKEPNSYRYLKST 484
           E N Y SG    R+V G+++   Y Y  ST
Sbjct: 367 ETNRYSSGRVLMRTVRGKEKTCYYPYHPST 396


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = -2

Query: 573 EENEY*SGMKNSRSVLGRKEPNSYRYLKST 484
           E N Y SG    R+V G+++   Y Y  ST
Sbjct: 367 ETNRYSSGRVLMRTVRGKEKTCYYPYHPST 396


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 11/53 (20%), Positives = 21/53 (39%)
 Frame = +1

Query: 553 ALIFIFFVQLPFSGVHAYFLVVLL*SCQVLAGFGELPLLHTLTHVPVHECALS 711
           A +  +F+ L  +GV  + + + L     + G G   +      +    C LS
Sbjct: 56  AFMVPYFIALALAGVPMFLMELSLGQMMTIGGLGVFKIAPIFKGIGYATCVLS 108


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 11/53 (20%), Positives = 21/53 (39%)
 Frame = +1

Query: 553 ALIFIFFVQLPFSGVHAYFLVVLL*SCQVLAGFGELPLLHTLTHVPVHECALS 711
           A +  +F+ L  +GV  + + + L     + G G   +      +    C LS
Sbjct: 109 AFMVPYFIALALAGVPMFLMELSLGQMMTIGGLGVFKIAPIFKGIGYATCVLS 161


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 7/19 (36%), Positives = 10/19 (52%)
 Frame = +3

Query: 528 GHFDCSSSRFNIHFLRPTP 584
           GH +C SS+F    +   P
Sbjct: 63  GHINCDSSKFEEDLMNKLP 81


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 198,519
Number of Sequences: 438
Number of extensions: 4628
Number of successful extensions: 16
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23388480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)