Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10k04f
(637 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar... 278 6e-76
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch... 268 3e-73
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces... 138 8e-34
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|... 120 1e-28
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 29 0.74
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 27 2.3
SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3 |Schizosacchar... 27 2.3
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 27 3.0
SPAC9E9.05 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 26 4.0
SPAC17C9.03 |tif471||translation initiation factor eIF4G |Schizo... 26 4.0
SPAC2C4.07c |||ribonuclease II |Schizosaccharomyces pombe|chr 1|... 25 9.1
SPCC895.06 |||RNA polymerase II elongator complex subunit Elp2 |... 25 9.1
>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 449
Score = 278 bits (681), Expect = 6e-76
Identities = 122/180 (67%), Positives = 147/180 (81%)
Frame = +2
Query: 98 MRECISVHIGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTLGGGDDSFNTFFSETGAGK 277
MRE IS+H+GQAG QIGNACWELYCLEHGIQP+G M + D F+TFFSETG GK
Sbjct: 1 MREIISIHVGQAGTQIGNACWELYCLEHGIQPNGYMNPETASQNSDGGFSTFFSETGQGK 60
Query: 278 HVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDVVLD 457
+VPR+++VDLEP V+D+VRTG YR LFHPEQLITGKEDA+NNYARGHYT+GKE+VD V D
Sbjct: 61 YVPRSIYVDLEPNVIDQVRTGPYRDLFHPEQLITGKEDASNNYARGHYTVGKELVDEVTD 120
Query: 458 RIRKLADQCTGLQGFLVFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFSIYPAPQVSTA 637
+IR++AD C+GLQGFLVFH LL+ERL+++Y KKSKL+FS+YPAPQVST+
Sbjct: 121 KIRRIADNCSGLQGFLVFHSFGGGTGSGFGALLLERLAMEYTKKSKLQFSVYPAPQVSTS 180
>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 455
Score = 268 bits (658), Expect = 3e-73
Identities = 122/185 (65%), Positives = 149/185 (80%), Gaps = 5/185 (2%)
Frame = +2
Query: 98 MRECISVHIGQAGVQIGNACWELYCLEHGIQPDGQMPSD-----KTLGGGDDSFNTFFSE 262
MRE ISVH+GQAGVQIGNACWELYCLEHGI PDG P++ K +D F TFFSE
Sbjct: 1 MREVISVHVGQAGVQIGNACWELYCLEHGIGPDG-FPTENSEVHKNNSYLNDGFGTFFSE 59
Query: 263 TGAGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIV 442
TG GK VPR+++VDLEP V+D+VRTG Y+ LFHPEQ++TGKEDA+NNYARGHYT+GKE++
Sbjct: 60 TGQGKFVPRSIYVDLEPNVIDQVRTGPYKDLFHPEQMVTGKEDASNNYARGHYTVGKEMI 119
Query: 443 DVVLDRIRKLADQCTGLQGFLVFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFSIYPAP 622
D VL+RIR++AD C+GLQGFLVFH LL+ERL+++YGKKS L+FS+YPAP
Sbjct: 120 DSVLERIRRMADNCSGLQGFLVFHSFGGGTGSGLGALLLERLNMEYGKKSNLQFSVYPAP 179
Query: 623 QVSTA 637
QVST+
Sbjct: 180 QVSTS 184
>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 448
Score = 138 bits (333), Expect = 8e-34
Identities = 68/178 (38%), Positives = 97/178 (54%)
Frame = +2
Query: 98 MRECISVHIGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTLGGGDDSFNTFFSETGAGK 277
MRE + + GQ G Q+G A W EHG+ G T + N +F+E GK
Sbjct: 1 MREIVHIQAGQCGNQVGAAFWSTIADEHGLDSAGIYHG--TSEAQHERLNVYFNEAAGGK 58
Query: 278 HVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDVVLD 457
+VPRAV VDLEP +D V++G + LF P+ +I G+ A N +A+GHYT G E+ D VLD
Sbjct: 59 YVPRAVLVDLEPGTMDAVKSGKFGNLFRPDNIIYGQSGAGNIWAKGHYTEGAELADAVLD 118
Query: 458 RIRKLADQCTGLQGFLVFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFSIYPAPQVS 631
+R+ A+ C LQGF + H LL+ ++ +Y + FS+ PAP+ S
Sbjct: 119 VVRREAEACDALQGFQLTHSLGGGTGSGMGTLLLSKIREEYPDRMMATFSVAPAPKSS 176
>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 446
Score = 120 bits (290), Expect = 1e-28
Identities = 65/177 (36%), Positives = 99/177 (55%), Gaps = 2/177 (1%)
Frame = +2
Query: 101 RECISVHIGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTLGGGDDSFNTFFSETGAGKH 280
RE I++ GQ G QIG+ W+ CLEHGI PDG + S T G D + FF ++ ++
Sbjct: 3 REIITLQAGQCGNQIGSQFWQQLCLEHGIGPDGTLESFAT--EGVDRKDVFFYQSDDTRY 60
Query: 281 VPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKE--DAANNYARGHYTIGKEIVDVVL 454
+PRA+ +DLEP VV+ + + TY L++PE ++ K A NN+A G Y+ + I + ++
Sbjct: 61 IPRAILIDLEPRVVNNILSDTYGSLYNPENILITKNGGGAGNNWANG-YSHAERIFEDIM 119
Query: 455 DRIRKLADQCTGLQGFLVFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFSIYPAPQ 625
D I + AD L+GF + H L+ERL+ Y KK +S++P Q
Sbjct: 120 DMIDREADGSDSLEGFSLLHSIAGGTGSGLGSFLLERLNDRYPKKIIQTYSVFPNSQ 176
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 28.7 bits (61), Expect = 0.74
Identities = 27/103 (26%), Positives = 51/103 (49%), Gaps = 4/103 (3%)
Frame = +3
Query: 144 LATPAGSCTASSMESSLMV-RCRQIRPSAVETTPLTRSSARPARESTCHELSLLIWNQL* 320
++T TAS SS+ V ++P + +TP++ SS+ + +ST S ++ +++
Sbjct: 452 ISTSVKQPTASVASSSVSVPSSSSVQPQS--STPISSSSSASSPQSTLSTSSEVV-SEVS 508
Query: 321 STRFVPALTV---NCSTPSSSSLAKRMLPITMPEDIIPLARRS 440
ST + + + STPSSS ++ M + IP + S
Sbjct: 509 STLLSGSSAIPSTSSSTPSSSIISSPMTSVLSSSSSIPTSSSS 551
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 27.1 bits (57), Expect = 2.3
Identities = 38/150 (25%), Positives = 61/150 (40%), Gaps = 2/150 (1%)
Frame = +3
Query: 174 SSMESSLMVRCRQIRPSAVETTPLTRSSARPARESTCHELSLLIWNQL*STRFVPALTVN 353
SS SSL +PS T+ T SSA P S+ + S + + S + T+
Sbjct: 172 SSTFSSLSSSTSSSQPSVSSTSSSTFSSAAPTSTSSSYLSSSSVVSSSSSPSSSSSSTLT 231
Query: 354 CSTPSSSSLAKRMLPITMPEDIIPLARRS*T*FWTGSGSWLTNAQGFRVSS-CFTRSEVE 530
S+ S+SS+ + + + S T + S S + ++ SS T S +
Sbjct: 232 SSSLSTSSIPSTSSSSSSTSSSLSSSSSSSTASSSSSSSSIISSSSSSSSSPTSTSSTIS 291
Query: 531 PAPDSHHF*WSV-SPLTTERSPSLSFPSIL 617
+ S S S +++ S S SF S L
Sbjct: 292 SSSSSSSSPTSTSSTISSSSSSSSSFSSTL 321
>SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1131
Score = 27.1 bits (57), Expect = 2.3
Identities = 11/38 (28%), Positives = 20/38 (52%)
Frame = +3
Query: 144 LATPAGSCTASSMESSLMVRCRQIRPSAVETTPLTRSS 257
++TPA + S+ + + PS+ +TTP + SS
Sbjct: 618 VSTPASNSNTGSLNGTSSFNVNSVGPSSSQTTPTSSSS 655
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 26.6 bits (56), Expect = 3.0
Identities = 20/91 (21%), Positives = 39/91 (42%)
Frame = +3
Query: 105 NASPFTSVKPAYRLATPAGSCTASSMESSLMVRCRQIRPSAVETTPLTRSSARPARESTC 284
N++ TSV + SS+ S+ + ++ +TPL+ ++ A ++
Sbjct: 395 NSTTSTSVSSTAPSYNTSSVLPTSSVSSTPLSSANSTTATSASSTPLSSVNSTTATSASS 454
Query: 285 HELSLLIWNQL*STRFVPALTVNCSTPSSSS 377
LS + S P +VN +T +S+S
Sbjct: 455 TPLSSVNSTTATSASSTPLTSVNSTTATSAS 485
>SPAC9E9.05 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 313
Score = 26.2 bits (55), Expect = 4.0
Identities = 18/63 (28%), Positives = 28/63 (44%), Gaps = 2/63 (3%)
Frame = +3
Query: 219 PSAVETTPLTRSSARP--ARESTCHELSLLIWNQL*STRFVPALTVNCSTPSSSSLAKRM 392
PS E P + P + S+ LSLL + L + P+ N S P S +R+
Sbjct: 120 PSTPELPPSSSPLLPPNGSESSSPIPLSLLSTSSLQQRKITPSNLSNTSKPMDSKQLERL 179
Query: 393 LPI 401
+P+
Sbjct: 180 IPV 182
>SPAC17C9.03 |tif471||translation initiation factor eIF4G
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1403
Score = 26.2 bits (55), Expect = 4.0
Identities = 14/59 (23%), Positives = 28/59 (47%)
Frame = +3
Query: 105 NASPFTSVKPAYRLATPAGSCTASSMESSLMVRCRQIRPSAVETTPLTRSSARPAREST 281
N F+ + + + T +S ++ + ++PS VE T +R++A+ EST
Sbjct: 8 NTPKFSYARALASSQSNKSNSTKASENNTATAEKQAVKPSGVEPTNTSRANAQKKTEST 66
>SPAC2C4.07c |||ribonuclease II |Schizosaccharomyces pombe|chr
1|||Manual
Length = 927
Score = 25.0 bits (52), Expect = 9.1
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = +3
Query: 540 DSHHF*WSVSPLTTERSPSLSFPSILLHR 626
D HH+ S + T SP +P I++HR
Sbjct: 751 DWHHYALSFNHYTHFTSPIRRYPDIIVHR 779
>SPCC895.06 |||RNA polymerase II elongator complex subunit Elp2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 760
Score = 25.0 bits (52), Expect = 9.1
Identities = 9/26 (34%), Positives = 17/26 (65%)
Frame = -1
Query: 346 VSAGTNLVDYSWFQINKDSSWHVLSR 269
+SAGT+ + + KD++WH ++R
Sbjct: 386 LSAGTDQTTRLFARFKKDNAWHEMAR 411
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,650,616
Number of Sequences: 5004
Number of extensions: 53361
Number of successful extensions: 144
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 283719918
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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