Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10k04f
         (637 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U50468-1|AAA93472.1|   91|Anopheles gambiae protein ( Anopheles ...    55   2e-09
AY334011-1|AAR01136.1|  188|Anopheles gambiae beta-tubulin protein.    54   3e-09
AY334010-1|AAR01135.1|  188|Anopheles gambiae beta-tubulin protein.    54   3e-09
AY334009-1|AAR01134.1|  188|Anopheles gambiae beta-tubulin protein.    54   3e-09
AY334008-1|AAR01133.1|  188|Anopheles gambiae beta-tubulin protein.    54   3e-09
DQ370037-1|ABD18598.1|  121|Anopheles gambiae putative TIL domai...    27   0.38 
AB097127-1|BAC82595.1| 1209|Anopheles gambiae reverse transcript...    27   0.66 

>U50468-1|AAA93472.1|   91|Anopheles gambiae protein ( Anopheles
           gambiae putativetubulin alpha chain mRNA, complete cds.
           ).
          Length = 91

 Score = 54.8 bits (126), Expect = 2e-09
 Identities = 32/77 (41%), Positives = 40/77 (51%)
 Frame = +3

Query: 141 RLATPAGSCTASSMESSLMVRCRQIRPSAVETTPLTRSSARPARESTCHELSLLIWNQL* 320
           ++  P   CT  SM S+  VRC + R S    T  T SS R A+ STC      IW++  
Sbjct: 15  QIGNPCWDCTVWSMASNRTVRCPRTRRSEAVMTRSTPSSPRLAQASTCPVPCSSIWSRPS 74

Query: 321 STRFVPALTVNCSTPSS 371
           S R  PA T +CST SS
Sbjct: 75  SMRCAPARTASCSTRSS 91



 Score = 50.0 bits (114), Expect = 6e-08
 Identities = 19/22 (86%), Positives = 21/22 (95%)
 Frame = +2

Query: 98  MRECISVHIGQAGVQIGNACWE 163
           MRECISVH+GQAGVQIGN CW+
Sbjct: 1   MRECISVHVGQAGVQIGNPCWD 22


>AY334011-1|AAR01136.1|  188|Anopheles gambiae beta-tubulin protein.
          Length = 188

 Score = 54.4 bits (125), Expect = 3e-09
 Identities = 26/72 (36%), Positives = 39/72 (54%)
 Frame = +2

Query: 416 HYTIGKEIVDVVLDRIRKLADQCTGLQGFLVFHXXXXXXXXXXXXLLMERLSVDYGKKSK 595
           HYT G E+VD VLD +RK  + C  LQGF + H            LL+ ++  +Y  +  
Sbjct: 1   HYTEGAELVDAVLDVVRKECENCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIM 60

Query: 596 LEFSIYPAPQVS 631
             +S+ P+P+VS
Sbjct: 61  NTYSVVPSPKVS 72


>AY334010-1|AAR01135.1|  188|Anopheles gambiae beta-tubulin protein.
          Length = 188

 Score = 54.4 bits (125), Expect = 3e-09
 Identities = 26/72 (36%), Positives = 39/72 (54%)
 Frame = +2

Query: 416 HYTIGKEIVDVVLDRIRKLADQCTGLQGFLVFHXXXXXXXXXXXXLLMERLSVDYGKKSK 595
           HYT G E+VD VLD +RK  + C  LQGF + H            LL+ ++  +Y  +  
Sbjct: 1   HYTEGAELVDAVLDVVRKECENCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIM 60

Query: 596 LEFSIYPAPQVS 631
             +S+ P+P+VS
Sbjct: 61  NTYSVVPSPKVS 72


>AY334009-1|AAR01134.1|  188|Anopheles gambiae beta-tubulin protein.
          Length = 188

 Score = 54.4 bits (125), Expect = 3e-09
 Identities = 26/72 (36%), Positives = 39/72 (54%)
 Frame = +2

Query: 416 HYTIGKEIVDVVLDRIRKLADQCTGLQGFLVFHXXXXXXXXXXXXLLMERLSVDYGKKSK 595
           HYT G E+VD VLD +RK  + C  LQGF + H            LL+ ++  +Y  +  
Sbjct: 1   HYTEGAELVDAVLDVVRKECENCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIM 60

Query: 596 LEFSIYPAPQVS 631
             +S+ P+P+VS
Sbjct: 61  NTYSVVPSPKVS 72


>AY334008-1|AAR01133.1|  188|Anopheles gambiae beta-tubulin protein.
          Length = 188

 Score = 54.4 bits (125), Expect = 3e-09
 Identities = 26/72 (36%), Positives = 39/72 (54%)
 Frame = +2

Query: 416 HYTIGKEIVDVVLDRIRKLADQCTGLQGFLVFHXXXXXXXXXXXXLLMERLSVDYGKKSK 595
           HYT G E+VD VLD +RK  + C  LQGF + H            LL+ ++  +Y  +  
Sbjct: 1   HYTEGAELVDAVLDVVRKECENCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIM 60

Query: 596 LEFSIYPAPQVS 631
             +S+ P+P+VS
Sbjct: 61  NTYSVVPSPKVS 72


>DQ370037-1|ABD18598.1|  121|Anopheles gambiae putative TIL domain
           polypeptide protein.
          Length = 121

 Score = 27.5 bits (58), Expect = 0.38
 Identities = 12/44 (27%), Positives = 24/44 (54%), Gaps = 3/44 (6%)
 Frame = -3

Query: 212 LTASDHQAGFHARGSTAPSRRCQSVRRLDR--CERRCIPS-FCK 90
           +  +D +  ++  GS+   R C+++RR D   C + C+   FC+
Sbjct: 56  IECTDPREVYNECGSSCDDRTCENIRRGDHLACTKHCVEGCFCR 99


>AB097127-1|BAC82595.1| 1209|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1209

 Score = 26.6 bits (56), Expect = 0.66
 Identities = 13/48 (27%), Positives = 23/48 (47%)
 Frame = +3

Query: 474 LTNAQGFRVSSCFTRSEVEPAPDSHHF*WSVSPLTTERSPSLSFPSIL 617
           + NAQ  R ++ +TR+   P PD  +  W    +T     +  F ++L
Sbjct: 457 VVNAQDIREATQYTRNGAAPGPDFVYNFWYKKLITIHEQIAACFNTVL 504


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 685,569
Number of Sequences: 2352
Number of extensions: 15006
Number of successful extensions: 32
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 62305095
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)