Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10k02r
(682 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_1573 + 27956351-27956409,27956411-27956630,27957000-279571... 227 5e-60
08_02_1568 + 27922338-27922342,27922839-27923058,27923369-279235... 227 5e-60
02_02_0678 + 12868735-12868739,12869576-12869795,12870280-128704... 227 5e-60
01_06_1419 + 37225007-37225011,37225633-37225852,37226347-372265... 225 3e-59
05_07_0079 - 27539389-27539892,27540059-27540343,27540453-275405... 50 2e-06
06_03_0392 + 20318728-20319309,20319596-20319725,20319844-203198... 44 1e-04
04_04_0401 - 24946801-24947562 43 2e-04
05_03_0678 - 16871481-16871620,16871836-16871881,16872170-168722... 35 0.052
02_05_1241 - 35189111-35189389,35189604-35189711,35189982-351907... 30 2.0
09_02_0251 - 6282420-6282526,6282642-6283104,6283223-6283289,628... 29 3.4
09_06_0364 + 22554082-22554225,22554306-22554520,22554671-225547... 29 4.5
03_02_0829 - 11599665-11600364,11600853-11601076,11601786-116020... 29 4.5
03_02_0221 + 6533643-6533687,6533860-6533955,6535323-6535682,653... 28 7.9
>08_02_1573 +
27956351-27956409,27956411-27956630,27957000-27957150,
27957602-27957807,27957967-27958020
Length = 229
Score = 227 bits (556), Expect = 5e-60
Identities = 117/227 (51%), Positives = 155/227 (68%)
Frame = -1
Query: 682 CFLQLPSVVIGGSLTNKMSSKVSRDTLYECVNAVLQSSKDKKRNFLETVELQIGLKNYDP 503
CFL V+ SL +++ K+ + L E ++ V+ SK+K R F ETVELQIGLKNYDP
Sbjct: 5 CFLNKIHVL---SLRDQLH-KLQSEVLKEAISQVVGESKEKGRKFTETVELQIGLKNYDP 60
Query: 502 QKDKRFSGTVKLKYIPRPKMQVCVLGDQQHCDEAKTLNVPCMXXXXXXXXXXXXXXXXXX 323
QKDKRFSG+VKL +IPRPKM+VC+LGD QH +EA+ + + M
Sbjct: 61 QKDKRFSGSVKLPHIPRPKMKVCMLGDAQHVEEAEKIGLDYMDVEALKKMNKNKKLVKKL 120
Query: 322 XXXXXXXXASESLIKQIPRLLGPGLNKAGKFPGLLSHQESMTQKIDEVKGTIKFQMKKVL 143
ASE++IKQIPRLLGPG KFP L++HQES+ K++E K T+KFQ+KKVL
Sbjct: 121 AKKYHAFLASEAIIKQIPRLLGPG-----KFPTLVTHQESLESKVNETKATVKFQLKKVL 175
Query: 142 CLSVAVGHVDMTPDELAQNVHLSINFLVSLLKKHWQNVRSLHMKSTM 2
C+ VAVG++ M ++ QN+ +S+NFLVSLLKK+WQNVR L++KSTM
Sbjct: 176 CMGVAVGNLSMEEKQIQQNIQMSVNFLVSLLKKNWQNVRCLYIKSTM 222
>08_02_1568 +
27922338-27922342,27922839-27923058,27923369-27923519,
27923874-27924079,27924211-27924264
Length = 211
Score = 227 bits (556), Expect = 5e-60
Identities = 111/208 (53%), Positives = 145/208 (69%)
Frame = -1
Query: 625 SKVSRDTLYECVNAVLQSSKDKKRNFLETVELQIGLKNYDPQKDKRFSGTVKLKYIPRPK 446
SK+ + L E ++ V+ K+K R F ETVELQIGLKNYDPQKDKRFSG+VKL +IPRPK
Sbjct: 2 SKLQTEALKEAISQVVADCKEKNRKFTETVELQIGLKNYDPQKDKRFSGSVKLPHIPRPK 61
Query: 445 MQVCVLGDQQHCDEAKTLNVPCMXXXXXXXXXXXXXXXXXXXXXXXXXXASESLIKQIPR 266
M+VC+LGD QH +EA+ + + M ASE++IKQIPR
Sbjct: 62 MKVCMLGDAQHVEEAEKIGLDYMDVEALKKMNKNKKLVKKLAKKYHAFLASEAIIKQIPR 121
Query: 265 LLGPGLNKAGKFPGLLSHQESMTQKIDEVKGTIKFQMKKVLCLSVAVGHVDMTPDELAQN 86
LLGPG KFP L++HQES+ K++E K T+KFQ+KKVLC+ VAVG++ M ++ QN
Sbjct: 122 LLGPG-----KFPTLVTHQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIQQN 176
Query: 85 VHLSINFLVSLLKKHWQNVRSLHMKSTM 2
+ +S+NFLVSLLKK+WQNVR L++KSTM
Sbjct: 177 IQMSVNFLVSLLKKNWQNVRCLYIKSTM 204
>02_02_0678 +
12868735-12868739,12869576-12869795,12870280-12870430,
12870853-12871058,12871166-12871219
Length = 211
Score = 227 bits (556), Expect = 5e-60
Identities = 110/208 (52%), Positives = 146/208 (70%)
Frame = -1
Query: 625 SKVSRDTLYECVNAVLQSSKDKKRNFLETVELQIGLKNYDPQKDKRFSGTVKLKYIPRPK 446
SK+ D L E ++ + S++K+R F+ET+ELQIGLKNYDPQKDKRFSG+VKL +IPRPK
Sbjct: 2 SKLQSDALREAISQIANDSREKQRKFVETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPK 61
Query: 445 MQVCVLGDQQHCDEAKTLNVPCMXXXXXXXXXXXXXXXXXXXXXXXXXXASESLIKQIPR 266
++VC+LGD QH +EA+ + + M ASE++IKQIPR
Sbjct: 62 LKVCMLGDAQHVEEAEKMGLDYMDVEALKKMNKNKKLVKKLAKKYHAFLASEAIIKQIPR 121
Query: 265 LLGPGLNKAGKFPGLLSHQESMTQKIDEVKGTIKFQMKKVLCLSVAVGHVDMTPDELAQN 86
LLGPG KFP L++HQES+ K++E K T+KFQ+KKVLC+ VAVG+ M ++ QN
Sbjct: 122 LLGPG-----KFPTLVTHQESLESKVNETKATVKFQLKKVLCMGVAVGNCAMEEKQIFQN 176
Query: 85 VHLSINFLVSLLKKHWQNVRSLHMKSTM 2
V +S+NFLVSLLKK+WQNVR L++KSTM
Sbjct: 177 VQMSVNFLVSLLKKNWQNVRCLYLKSTM 204
>01_06_1419 +
37225007-37225011,37225633-37225852,37226347-37226516,
37226615-37226676,37227002-37227207,37227581-37227634
Length = 238
Score = 225 bits (550), Expect = 3e-59
Identities = 116/230 (50%), Positives = 151/230 (65%), Gaps = 22/230 (9%)
Frame = -1
Query: 625 SKVSRDTLYECVNAVLQSSKDKKRNFLETVELQIGLKNYDPQKDKRFSGTVKLKYIPRPK 446
SK+ D L E ++ + S++K+R F+ET+ELQIGLKNYDPQKDKRFSG+VKL +IPRPK
Sbjct: 2 SKLQSDALREAISQITSESREKQRKFVETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPK 61
Query: 445 MQVCVLGDQQHCDEAKTLNVPCMXXXXXXXXXXXXXXXXXXXXXXXXXXASESLIKQIPR 266
M+VC+LGD QH +EA+ + + M ASE++IKQIPR
Sbjct: 62 MKVCMLGDAQHVEEAEKMGLDYMDVEALKKMNKNKKLVKKLAKKYHAFLASEAIIKQIPR 121
Query: 265 LLGPGLNKA----------------------GKFPGLLSHQESMTQKIDEVKGTIKFQMK 152
LLGPGLNKA GKFP L++HQES+ K++E K T+KFQ+K
Sbjct: 122 LLGPGLNKAGKILLVYGRSILKSSYIIVSKRGKFPTLVTHQESLESKVNETKATVKFQLK 181
Query: 151 KVLCLSVAVGHVDMTPDELAQNVHLSINFLVSLLKKHWQNVRSLHMKSTM 2
KVLC+ VAVG+ M ++ QNV +S+NFLVSLLKK+WQNVR L++KSTM
Sbjct: 182 KVLCMGVAVGNCAMEEKQIFQNVQMSVNFLVSLLKKNWQNVRCLYLKSTM 231
>05_07_0079 -
27539389-27539892,27540059-27540343,27540453-27540550,
27540951-27541042,27541155-27541259,27541360-27541567,
27542469-27542472,27542742-27542765,27545025-27546266
Length = 853
Score = 49.6 bits (113), Expect = 2e-06
Identities = 24/95 (25%), Positives = 48/95 (50%), Gaps = 1/95 (1%)
Frame = -1
Query: 289 SLIKQIPRLLGPGLNKAGKFPGLLSHQES-MTQKIDEVKGTIKFQMKKVLCLSVAVGHVD 113
+++ +PR+LG K P + + +++ +V + ++ C + VG +D
Sbjct: 145 AVLPLLPRVLGKAFYSTKKAPVAVDFARTGWLEQVRKVMNSTFLYLRTGTCSGIKVGRLD 204
Query: 112 MTPDELAQNVHLSINFLVSLLKKHWQNVRSLHMKS 8
M ++ +NV ++ V + K W NVRSLH+K+
Sbjct: 205 MKEEDTVENVMAAVEAAVENVPKKWANVRSLHLKA 239
>06_03_0392 +
20318728-20319309,20319596-20319725,20319844-20319895,
20319995-20320061,20320547-20320633,20322526-20322567,
20322635-20322740,20323155-20323219,20323299-20323343,
20323442-20323549,20323636-20323723,20324147-20324193,
20324355-20324363
Length = 475
Score = 44.0 bits (99), Expect = 1e-04
Identities = 41/174 (23%), Positives = 74/174 (42%), Gaps = 2/174 (1%)
Frame = -1
Query: 574 SSKDKKRNFLETVELQIGLKNYDPQK-DKRFSGTVKLKYIPRPKMQVCVLGDQQHCDEAK 398
S+ +KKRNF ETVE + L DP++ D+ G + L + ++V V + DEA+
Sbjct: 279 SANEKKRNFTETVEAHVML-GVDPRRGDQMVRGALTLPHGTGKTVRVAVFAEGPAADEAR 337
Query: 397 TLNVPCMXXXXXXXXXXXXXXXXXXXXXXXXXXASESLIKQIPRLLGP-GLNKAGKFPGL 221
+ L K + R+LGP GL K G
Sbjct: 338 AAGADVVGGDELIEEIRTGGGKLSFDKCIATPMYMPRLSK-VARILGPRGLMPNPKL-GS 395
Query: 220 LSHQESMTQKIDEVKGTIKFQMKKVLCLSVAVGHVDMTPDELAQNVHLSINFLV 59
+++ S K + G + F++ K + V +G ++ + + L +N+ ++ L+
Sbjct: 396 VTNDVSGAVKAAK-SGRVDFKIDKTAIVHVGLGKINFSDENLRENIGAFVHALL 448
>04_04_0401 - 24946801-24947562
Length = 253
Score = 43.2 bits (97), Expect = 2e-04
Identities = 20/84 (23%), Positives = 42/84 (50%)
Frame = -1
Query: 259 GPGLNKAGKFPGLLSHQESMTQKIDEVKGTIKFQMKKVLCLSVAVGHVDMTPDELAQNVH 80
G KA + + ++ + E ++ +++ C +V VGH M +E +NV
Sbjct: 113 GKAAAKAARVVPVDLADQAWAESAREAARRVELRVEGGTCRAVRVGHAAMAREEAVENVV 172
Query: 79 LSINFLVSLLKKHWQNVRSLHMKS 8
++ + + + W+NVR+LH+K+
Sbjct: 173 AAVEAAAACVPRKWRNVRALHVKA 196
>05_03_0678 -
16871481-16871620,16871836-16871881,16872170-16872243,
16872495-16872552,16872640-16872702,16872891-16873012,
16873132-16873247,16873367-16873428,16873497-16873589,
16874061-16874138,16874248-16874423,16874500-16874550,
16874964-16875078
Length = 397
Score = 35.1 bits (77), Expect = 0.052
Identities = 24/93 (25%), Positives = 41/93 (44%), Gaps = 2/93 (2%)
Frame = -1
Query: 649 GSLTNKMSSKVSRDTLYECVNAVLQSSKDKK-RNFLETVELQIGLKNYDPQKDKRFSGTV 473
G+ + +S + T +E + + LQS K K R +E + D + K + +
Sbjct: 242 GNRRSSISKEDVNATRWEQLKSTLQSGKHKGLRRCIEEIVFSYTYPRLDMEVSKHMNHLL 301
Query: 472 KLKYIPRPKM-QVCVLGDQQHCDEAKTLNVPCM 377
K + PK +VCV D +CD+ VP +
Sbjct: 302 KAPFCIHPKTGRVCVPIDPNNCDDFDPTTVPTL 334
>02_05_1241 -
35189111-35189389,35189604-35189711,35189982-35190713,
35190811-35191230,35191484-35191565,35191719-35192002,
35193104-35193256
Length = 685
Score = 29.9 bits (64), Expect = 2.0
Identities = 10/19 (52%), Positives = 16/19 (84%)
Frame = -1
Query: 97 LAQNVHLSINFLVSLLKKH 41
+ + VHLS+NF++ L+KKH
Sbjct: 302 IVEGVHLSLNFVMGLMKKH 320
>09_02_0251 -
6282420-6282526,6282642-6283104,6283223-6283289,
6283536-6283808,6284096-6284907,6285402-6285479,
6285586-6285636,6285737-6285817,6285903-6285982,
6288481-6288652
Length = 727
Score = 29.1 bits (62), Expect = 3.4
Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 3/58 (5%)
Frame = +1
Query: 91 EQAHQESCPHGQLLQKDTA---PSSFGT*WFP*LHQSSASWTPGGREDQGIYQLCSNR 255
E+ + ++ + QL+ K A P F WFP +H ++ S R Q I+ +C N+
Sbjct: 471 EKYNLQNVKYLQLMFKARATYIPVYFKNDWFPFIHSTTLSEGTNARRRQDIFGVCCNK 528
>09_06_0364 +
22554082-22554225,22554306-22554520,22554671-22554752,
22554976-22555371,22555553-22556293,22556420-22556551,
22556981-22557367
Length = 698
Score = 28.7 bits (61), Expect = 4.5
Identities = 10/25 (40%), Positives = 17/25 (68%)
Frame = -1
Query: 115 DMTPDELAQNVHLSINFLVSLLKKH 41
D + + VHLS+NF++ L++KH
Sbjct: 262 DRKESVVVEGVHLSLNFVMGLMRKH 286
>03_02_0829 -
11599665-11600364,11600853-11601076,11601786-11602000,
11602300-11602377,11602593-11603907
Length = 843
Score = 28.7 bits (61), Expect = 4.5
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = +1
Query: 475 QCRRNACPSVGHSSSDQFEALQSPKS 552
Q RN PS+ H +SD F + SP S
Sbjct: 81 QKSRNLSPSISHQASDSFSPVPSPLS 106
>03_02_0221 +
6533643-6533687,6533860-6533955,6535323-6535682,
6537106-6537177,6537374-6537697
Length = 298
Score = 27.9 bits (59), Expect = 7.9
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = +1
Query: 442 AFSAAVCILALQCRRNACPSVGH 510
A A VCI L+CR+ CP H
Sbjct: 110 ASRAEVCIFCLRCRQVLCPRCSH 132
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,890,755
Number of Sequences: 37544
Number of extensions: 391237
Number of successful extensions: 1040
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1001
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1033
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1721314888
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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