Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10k02f
(629 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC024200-4|AAF36008.1| 216|Caenorhabditis elegans Ribosomal pro... 233 8e-62
AJ270980-1|CAB65902.1| 186|Caenorhabditis elegans 60s ribosomal... 192 1e-49
AC024200-5|AAK66025.1| 155|Caenorhabditis elegans Ribosomal pro... 147 7e-36
Z81576-2|CAB04644.1| 522|Caenorhabditis elegans Hypothetical pr... 31 0.51
AF099915-5|AAC68770.1| 118|Caenorhabditis elegans Hypothetical ... 29 2.7
Z70212-2|CAA94163.1| 430|Caenorhabditis elegans Hypothetical pr... 28 6.3
AF038613-11|AAB92054.2| 836|Caenorhabditis elegans Mammalian el... 27 8.4
>AC024200-4|AAF36008.1| 216|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 1, isoform a protein.
Length = 216
Score = 233 bits (570), Expect = 8e-62
Identities = 112/191 (58%), Positives = 136/191 (71%)
Frame = +3
Query: 57 SKVSRDTLYECVNAVLQSSKDKKRNFLETVELQIGLKNYDPQKDKRFSGTVKLKYIPRPK 236
SKVSR++L E + VL+ S +K R F ET+ELQIGLKNYDPQKDKRFSG+++LK+IPRP
Sbjct: 2 SKVSRESLNEAIAEVLKGSSEKPRKFRETIELQIGLKNYDPQKDKRFSGSIRLKHIPRPN 61
Query: 237 MQVCVLGDQQHCDEAKTLNVPCMXXXXXXXXXXXXXXXXXXXXXXXXXXXSESLIKQIPR 416
M+VCV GDQ H DEA ++P M SESLIKQIPR
Sbjct: 62 MKVCVFGDQHHLDEAAAGDIPSMSADDLKKLNKQKKLIKKLAKSYDAFIASESLIKQIPR 121
Query: 417 LLGPGLNKAGKFPGLLSHQESMTQKIDEVKGTIKFQMKKVLCLSVAVGHVDMTPDELAQN 596
+LGPGLNKAGKFP +++H ES+ K DE++ T+KFQMKKVLCLSVAVGHV +T +EL N
Sbjct: 122 ILGPGLNKAGKFPSVVTHGESLQSKSDEIRATVKFQMKKVLCLSVAVGHVGLTQEELVSN 181
Query: 597 VHLSINFLVSL 629
+ LSINFLVSL
Sbjct: 182 ISLSINFLVSL 192
>AJ270980-1|CAB65902.1| 186|Caenorhabditis elegans 60s ribosomal
protein L10A protein.
Length = 186
Score = 192 bits (469), Expect = 1e-49
Identities = 91/155 (58%), Positives = 109/155 (70%)
Frame = +3
Query: 165 KNYDPQKDKRFSGTVKLKYIPRPKMQVCVLGDQQHCDEAKTLNVPCMXXXXXXXXXXXXX 344
KNYDPQKDKRFSG+++LK+IPRP M+VCV GDQ H DEA ++P M
Sbjct: 8 KNYDPQKDKRFSGSIRLKHIPRPNMKVCVFGDQHHLDEAAAGDIPSMSADDLKKLNKQKK 67
Query: 345 XXXXXXXXXXXXXXSESLIKQIPRLLGPGLNKAGKFPGLLSHQESMTQKIDEVKGTIKFQ 524
SESLIKQIPR+LGPGLNKAGKFP +++H ES+ K DE++ T+KFQ
Sbjct: 68 LIKKLAKSYDAFIASESLIKQIPRILGPGLNKAGKFPSVVTHGESLQSKSDEIRATVKFQ 127
Query: 525 MKKVLCLSVAVGHVDMTPDELAQNVHLSINFLVSL 629
MKKVLCLSVAVGHV +T +EL N+ LSINFLVSL
Sbjct: 128 MKKVLCLSVAVGHVGLTQEELVSNISLSINFLVSL 162
>AC024200-5|AAK66025.1| 155|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 1, isoform b protein.
Length = 155
Score = 147 bits (356), Expect = 7e-36
Identities = 72/131 (54%), Positives = 86/131 (65%)
Frame = +3
Query: 237 MQVCVLGDQQHCDEAKTLNVPCMXXXXXXXXXXXXXXXXXXXXXXXXXXXSESLIKQIPR 416
M+VCV GDQ H DEA ++P M SESLIKQIPR
Sbjct: 1 MKVCVFGDQHHLDEAAAGDIPSMSADDLKKLNKQKKLIKKLAKSYDAFIASESLIKQIPR 60
Query: 417 LLGPGLNKAGKFPGLLSHQESMTQKIDEVKGTIKFQMKKVLCLSVAVGHVDMTPDELAQN 596
+LGPGLNKAGKFP +++H ES+ K DE++ T+KFQMKKVLCLSVAVGHV +T +EL N
Sbjct: 61 ILGPGLNKAGKFPSVVTHGESLQSKSDEIRATVKFQMKKVLCLSVAVGHVGLTQEELVSN 120
Query: 597 VHLSINFLVSL 629
+ LSINFLVSL
Sbjct: 121 ISLSINFLVSL 131
>Z81576-2|CAB04644.1| 522|Caenorhabditis elegans Hypothetical
protein R10E8.3 protein.
Length = 522
Score = 31.5 bits (68), Expect = 0.51
Identities = 23/70 (32%), Positives = 34/70 (48%), Gaps = 2/70 (2%)
Frame = -1
Query: 611 DGKMHILSKLIRSHVHMANCYRKTQHLLHLELNGS--LDFINLLRHGLLVGEKTREFTSF 438
D + + L K+ + + + +R + HLEL GS L+FI LL L +K R+ T F
Sbjct: 329 DFERYTLEKMQNLGIFLGS-FRNKISMAHLELKGSSELEFIQLL--DCLDAKKLRKLTIF 385
Query: 437 VQTGTQQTGN 408
G GN
Sbjct: 386 ATVGDVNNGN 395
>AF099915-5|AAC68770.1| 118|Caenorhabditis elegans Hypothetical
protein E02H9.4 protein.
Length = 118
Score = 29.1 bits (62), Expect = 2.7
Identities = 15/37 (40%), Positives = 21/37 (56%)
Frame = +3
Query: 114 KDKKRNFLETVELQIGLKNYDPQKDKRFSGTVKLKYI 224
K +K N E VEL +KNY P+ + R V+ KY+
Sbjct: 41 KGEKYNGNEKVELTTTVKNYKPKNNTRKWPAVEAKYL 77
>Z70212-2|CAA94163.1| 430|Caenorhabditis elegans Hypothetical
protein R04D3.3 protein.
Length = 430
Score = 27.9 bits (59), Expect = 6.3
Identities = 17/56 (30%), Positives = 28/56 (50%)
Frame = +3
Query: 27 IGGSLTNKMSSKVSRDTLYECVNAVLQSSKDKKRNFLETVELQIGLKNYDPQKDKR 194
+GGS + + +D+L E ++ + +S K K LET+ Q G K D +R
Sbjct: 189 VGGSSMEDVLTSDEKDSLSEAISNLPKSPKSKTDRDLETL-AQSGSKTRDSHSRRR 243
>AF038613-11|AAB92054.2| 836|Caenorhabditis elegans Mammalian
elks/cast/erc/rab6 interactingprotein homolog protein 1
protein.
Length = 836
Score = 27.5 bits (58), Expect = 8.4
Identities = 13/40 (32%), Positives = 23/40 (57%)
Frame = +3
Query: 399 IKQIPRLLGPGLNKAGKFPGLLSHQESMTQKIDEVKGTIK 518
I +IP G GLN A ++ L ++M +K+++ +IK
Sbjct: 142 ISRIPTGTGSGLNIAREYEQLKVEYDTMMEKLNQTMNSIK 181
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,041,564
Number of Sequences: 27780
Number of extensions: 317723
Number of successful extensions: 779
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 753
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 776
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1385109898
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -