Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10j21r
         (721 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF099925-2|AAC69505.1|  265|Caenorhabditis elegans Hypothetical ...   105   2e-23
U88315-13|AAN84844.1|  359|Caenorhabditis elegans Hypothetical p...    46   2e-05
U88315-12|AAB42367.1|  444|Caenorhabditis elegans Hypothetical p...    46   2e-05
Z75712-10|CAB00039.2|  332|Caenorhabditis elegans Hypothetical p...    33   0.21 
AC024857-2|AAK31567.2|  463|Caenorhabditis elegans Hypothetical ...    32   0.47 
U00052-2|AAK95881.1|  404|Caenorhabditis elegans Hypothetical pr...    30   1.4  
U23523-1|AAC46560.2|  305|Caenorhabditis elegans Hypothetical pr...    30   1.9  
AF106575-13|AAC78162.2|  393|Caenorhabditis elegans Serpentine r...    29   2.5  
Z83116-4|CAB05562.1|  287|Caenorhabditis elegans Hypothetical pr...    28   5.8  
AF125443-1|AAD12801.1|  783|Caenorhabditis elegans Hypothetical ...    28   5.8  

>AF099925-2|AAC69505.1|  265|Caenorhabditis elegans Hypothetical
           protein K01A2.5 protein.
          Length = 265

 Score =  105 bits (253), Expect = 2e-23
 Identities = 60/227 (26%), Positives = 109/227 (48%), Gaps = 2/227 (0%)
 Frame = -2

Query: 714 GALGTIWTDYKPQI-EGIDKNDFTLVAWDPPGYGKSRPPMKQFDVDFYEKDADYAFNFMK 538
           GA+G    D+  ++      +  T+V  DPPGYG SRPP ++ +V    KD++Y    M+
Sbjct: 35  GAVGCYKKDWPLKLLSHFPPDQVTIVGIDPPGYGTSRPPERKQEVQRCMKDSEYCLGLME 94

Query: 537 ALNIPKYSILGWSDGGITGIIHAAKYPETVQKLVIWGSNSFMLPHELEMXXXXXXXXXXX 358
            L +  ++++GWS+G  T +  AAK  E V ++++    + +                  
Sbjct: 95  TLKLEPFTVMGWSEGARTTVHVAAKGKEKVNRMIVMAGATKVNHLGAMAFKGMRETNHWL 154

Query: 357 XKMRQPMIDVYGEELFAKYWSKWVEGMENLFNKKDGNI-CSELLKDVKCPTLILYGEKDP 181
              RQP +D Y  E     W+   + ++ + +   G   C  +L  VKCPTL++ G  D 
Sbjct: 155 AAGRQPYLDHYSPETLRTQWAALCDVVDQVHSFCGGRFPCDLVLPQVKCPTLVMNGGLDR 214

Query: 180 LVDRVHVSHLHTHIEGSRIHLYPDGKHNIHISYAEDFNKKVQDFLQS 40
                +V  +      +++ ++  G H+ ++ Y + F+ KV +FL+S
Sbjct: 215 FCGDPNVCFIPVLKSLAKVEIHAQGGHDFYLKYPKWFSGKVLEFLKS 261


>U88315-13|AAN84844.1|  359|Caenorhabditis elegans Hypothetical
           protein C37H5.3b protein.
          Length = 359

 Score = 46.4 bits (105), Expect = 2e-05
 Identities = 26/80 (32%), Positives = 43/80 (53%), Gaps = 4/80 (5%)
 Frame = -2

Query: 648 TLVAWDPPGYGKSRPPMKQFDVDFYEKD-ADYAFNFMKALNIPKYSILGWSDGGITGIIH 472
           T+ A+D PG+G+S  P    D +  E +  D    +   +N+ K +++G S GG     +
Sbjct: 103 TVHAFDLPGFGRSSRPKFSSDPETAETEMIDSIEQWRDKMNLEKMNLVGHSFGGYLATSY 162

Query: 471 AAKYPETVQKLVI---WGSN 421
           A KYP+ V+ L++   WG N
Sbjct: 163 ALKYPKRVENLILADPWGFN 182


>U88315-12|AAB42367.1|  444|Caenorhabditis elegans Hypothetical
           protein C37H5.3a protein.
          Length = 444

 Score = 46.4 bits (105), Expect = 2e-05
 Identities = 26/80 (32%), Positives = 43/80 (53%), Gaps = 4/80 (5%)
 Frame = -2

Query: 648 TLVAWDPPGYGKSRPPMKQFDVDFYEKD-ADYAFNFMKALNIPKYSILGWSDGGITGIIH 472
           T+ A+D PG+G+S  P    D +  E +  D    +   +N+ K +++G S GG     +
Sbjct: 188 TVHAFDLPGFGRSSRPKFSSDPETAETEMIDSIEQWRDKMNLEKMNLVGHSFGGYLATSY 247

Query: 471 AAKYPETVQKLVI---WGSN 421
           A KYP+ V+ L++   WG N
Sbjct: 248 ALKYPKRVENLILADPWGFN 267


>Z75712-10|CAB00039.2|  332|Caenorhabditis elegans Hypothetical
           protein K04G2.2 protein.
          Length = 332

 Score = 33.1 bits (72), Expect = 0.21
 Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 4/58 (6%)
 Frame = -2

Query: 237 ELLKDVKCPTLILYGEKDPLVDRVHVSHLHTHIEGSRIHLY-PDGKHN---IHISYAE 76
           E +  VKCPTL+++G  D ++D  H   ++     S   L+ P   HN   +H +Y E
Sbjct: 239 EKVPRVKCPTLVIHGTDDEVIDFSHGVSIYERCPTSVEPLWVPGAGHNDVELHAAYLE 296


>AC024857-2|AAK31567.2|  463|Caenorhabditis elegans Hypothetical
           protein Y71G12A.4 protein.
          Length = 463

 Score = 31.9 bits (69), Expect = 0.47
 Identities = 22/66 (33%), Positives = 29/66 (43%)
 Frame = -2

Query: 237 ELLKDVKCPTLILYGEKDPLVDRVHVSHLHTHIEGSRIHLYPDGKHNIHISYAEDFNKKV 58
           E  K +  PTLI +GEKD +V   H   L   I    +HL     H   I    +   +V
Sbjct: 343 EKSKGIGSPTLICHGEKDYIVGHEHGVLLKDTIPDCELHLLQHASHQ-GIFCEREMWDRV 401

Query: 57  QDFLQS 40
           + FL S
Sbjct: 402 EAFLGS 407


>U00052-2|AAK95881.1|  404|Caenorhabditis elegans Hypothetical
           protein K02F3.6 protein.
          Length = 404

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 25/88 (28%), Positives = 38/88 (43%), Gaps = 1/88 (1%)
 Frame = -2

Query: 696 WTDYKPQI-EGIDKNDFTLVAWDPPGYGKSRPPMKQFDVDFYEKDADYAFNFMKALNIPK 520
           W  ++ Q+ E  DK  +  VA D  GY  S  P    +    E   D   + ++ L   K
Sbjct: 152 WYSWRFQLKEFADK--YRCVAIDQRGYNLSDKPKHVDNYSIDELTGDIR-DVIEGLGYDK 208

Query: 519 YSILGWSDGGITGIIHAAKYPETVQKLV 436
             ++    GG+     A +YPE V KL+
Sbjct: 209 AIVVAHDWGGLVAWQFAEQYPEMVDKLI 236


>U23523-1|AAC46560.2|  305|Caenorhabditis elegans Hypothetical
           protein F53A9.5 protein.
          Length = 305

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 17/51 (33%), Positives = 24/51 (47%)
 Frame = -2

Query: 657 NDFTLVAWDPPGYGKSRPPMKQFDVDFYEKDADYAFNFMKALNIPKYSILG 505
           N+ TLV  D PG+  S      +  +F E   DY   ++  L IP   +LG
Sbjct: 10  NNSTLVTTDQPGFSGSTKGTCSYPTNFAE--VDYISTYIYLLAIPTICVLG 58


>AF106575-13|AAC78162.2|  393|Caenorhabditis elegans Serpentine
           receptor, class w protein96 protein.
          Length = 393

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 19/56 (33%), Positives = 24/56 (42%), Gaps = 4/56 (7%)
 Frame = -3

Query: 182 LWWTEFMYRICILILK----DHEYICTPMGSTIST*VMQKISIKKFKTSFNHPNNK 27
           +WW  F+Y IC  IL      H  IC  M       V +   I K KTS  H  ++
Sbjct: 332 IWWGTFVYHICNAILTVNIISHCIICYIMSGQYKATVRR---ILKIKTSITHEQHE 384


>Z83116-4|CAB05562.1|  287|Caenorhabditis elegans Hypothetical
           protein M01B2.4 protein.
          Length = 287

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = -1

Query: 205 YTVWRKRSFGGQSSCIAFAYSY*RITNTFVPRWEAQYPHK 86
           + VW   S G   S +A + S  R+  TF+P +  +Y  K
Sbjct: 83  WLVWASTSIGSMRSILALSISIERVFATFIPVYFHKYRSK 122


>AF125443-1|AAD12801.1|  783|Caenorhabditis elegans Hypothetical
           protein H32C10.3 protein.
          Length = 783

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 16/40 (40%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
 Frame = -2

Query: 666 IDKNDFTLVAWDPPGYGKSRPPMKQFDVDFYEKDAD-YAF 550
           ID  DF+L+  +P    +S  P K F  D  EK  D Y F
Sbjct: 505 IDYIDFSLILTNPGVLPRSTTPFKDFIKDLEEKQIDRYCF 544


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,389,190
Number of Sequences: 27780
Number of extensions: 395970
Number of successful extensions: 922
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 895
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 920
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1687292480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)