Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10j21r
         (721 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    23   2.9  
AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alph...    22   6.7  
D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    21   8.9  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               21   8.9  
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    21   8.9  
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    21   8.9  

>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = -2

Query: 651 FTLVAWDPPGYGKSRPPMK 595
           F L+  DP  Y K RPP K
Sbjct: 38  FDLLPEDPKLYDKMRPPKK 56


>AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alpha
           protein precursor protein.
          Length = 153

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = -2

Query: 534 LNIPKYSILGWSDGGITGIIHAAKYPETVQK 442
           LN    +I+G  +   T +IH  +YP  V K
Sbjct: 16  LNETAKAIIGVDECQATPVIHFLQYPGCVPK 46


>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = -2

Query: 579 FYEKDADYAFNFMKALNIPKYS 514
           +Y+  AD+ FNF    N+ + S
Sbjct: 297 YYDYGADFPFNFAFIKNVSRDS 318


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = +1

Query: 166 NSVHQRIFFSIQYKG 210
           NS+HQR  FS+   G
Sbjct: 116 NSIHQRASFSLNTDG 130


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = -2

Query: 579 FYEKDADYAFNFMKALNIPKYS 514
           +Y+  AD+ FNF    N+ + S
Sbjct: 297 YYDYGADFPFNFAFIKNVSRDS 318


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 11/45 (24%), Positives = 21/45 (46%)
 Frame = -2

Query: 138 EGSRIHLYPDGKHNIHISYAEDFNKKVQDFLQSP***E*NYFWYS 4
           E   + + PDG  N    +  ++  + + FLQ     E N +W++
Sbjct: 325 EKRMVIILPDGIRNYLTKFVSEYWMETRGFLQPVCQNEMNKWWWN 369


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 213,686
Number of Sequences: 438
Number of extensions: 5176
Number of successful extensions: 10
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22292145
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)