Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10j21f
         (593 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22H12.03 |||mitochondrial hydrolase|Schizosaccharomyces pomb...    31   0.13 
SPAC17A5.14 |exo2||exonuclease II Exo2 |Schizosaccharomyces pomb...    26   3.6  
SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr...    25   6.3  
SPBC26H8.03 |cho2||phosphatidylethanolamine N-methyltransferase ...    25   6.3  
SPBC1105.05 |exg1||glucan 1,3-beta-glucosidase I/II precursor|Sc...    25   6.3  

>SPAC22H12.03 |||mitochondrial hydrolase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 270

 Score = 31.1 bits (67), Expect = 0.13
 Identities = 15/33 (45%), Positives = 20/33 (60%)
 Frame = +1

Query: 493 AFNFMKALNIPKYSILGWSDGGITGIIHAAKYP 591
           AF FMK   + K SI+G S G  T ++ A K+P
Sbjct: 77  AFQFMKDHKLDKASIIGHSMGAKTAMVTALKWP 109


>SPAC17A5.14 |exo2||exonuclease II Exo2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1328

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 20/59 (33%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
 Frame = +3

Query: 129 KVTKKDFIETKNADNA*KCNFAYY-ELY*NVTCEMYVYGRSKGGES*SIWVQYKLCQSW 302
           K  +KDFI+ K+     K  F+YY E       E YV G         ++  Y+ CQSW
Sbjct: 487 KNVEKDFIQWKDDYYRSKVGFSYYDEEALKAMAERYVEGLQW-----VLFYYYRGCQSW 540


>SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1517

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +1

Query: 319 LICLPGALGTIWTDYKPQIEG 381
           ++CLP  +G IW D  P + G
Sbjct: 608 VLCLPNIVGEIWVD-SPSLSG 627


>SPBC26H8.03 |cho2||phosphatidylethanolamine N-methyltransferase
           Cho2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 905

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 17/58 (29%), Positives = 29/58 (50%)
 Frame = +1

Query: 232 MSTAVPKEEKVKVSGCNINYVKVGKGSHNLICLPGALGTIWTDYKPQIEGIDKNDFTL 405
           ++TA PK +++ + G   N  K  + +   +  P    +   DYK +I+GID N   L
Sbjct: 648 VNTAPPKVQEL-LKGTESNLRKNAQLAILKLFAPQLSSSTHFDYKLEIKGIDNNQVLL 704


>SPBC1105.05 |exg1||glucan 1,3-beta-glucosidase I/II
           precursor|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 407

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +1

Query: 415 DPPGYGKSRPPMKQFDVDFY 474
           +P GYG     +KQ+D+D Y
Sbjct: 213 EPLGYGLDMDQLKQYDLDAY 232


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,292,467
Number of Sequences: 5004
Number of extensions: 47412
Number of successful extensions: 136
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 258201856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)