Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10j21f
         (593 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0517 + 18482902-18482986,18483074-18483291,18483888-184840...    38   0.006
10_08_0515 - 18473545-18473791,18473921-18474156,18474299-184744...    37   0.014
10_08_0516 + 18478743-18478830,18478940-18479319,18479406-184796...    36   0.032
03_06_0541 - 34607071-34607353,34608167-34608399,34609093-346092...    32   0.40 
01_01_1078 + 8489872-8490168,8490280-8490462,8490667-8490908,849...    31   0.92 
01_01_1077 + 8485655-8486134,8486423-8486554,8487725-8487966,848...    31   0.92 
03_06_0542 - 34611864-34612364,34613932-34614132,34614745-34615059     30   1.6  
07_01_0233 - 1703602-1705623                                           29   2.1  
06_01_1093 - 8970996-8971667,8971756-8971902,8971982-8972118,897...    29   2.1  
01_05_0459 - 22435374-22435397,22435517-22435691,22435881-224359...    29   3.7  
12_02_1247 - 27322920-27323175,27323252-27323490,27324309-27324776     28   6.5  
01_06_0304 + 28340976-28342512,28342774-28342799,28343268-28343999     28   6.5  

>10_08_0517 +
           18482902-18482986,18483074-18483291,18483888-18484049,
           18484132-18484367,18484455-18484710
          Length = 318

 Score = 37.9 bits (84), Expect = 0.006
 Identities = 25/108 (23%), Positives = 45/108 (41%)
 Frame = +1

Query: 268 VSGCNINYVKVGKGSHNLICLPGALGTIWTDYKPQIEGIDKNDFTLVAWDPPGYGKSRPP 447
           V G  ++  + GKG    +        IW  ++ Q+  +    +  VA D  GYG S  P
Sbjct: 16  VRGLTLHVAQAGKGELGTVVFLHGFPEIWYSWRHQMLAVAAAGYRAVAPDWRGYGLSDQP 75

Query: 448 MKQFDVDFYEKDADYAFNFMKALNIPKYSILGWSDGGITGIIHAAKYP 591
            +  +   Y+   +     + AL +PK  ++G   G +     A ++P
Sbjct: 76  PEP-EAAVYDDLIEDLLAILDALAVPKAFLVGKDFGAMPAYDFALRHP 122


>10_08_0515 -
           18473545-18473791,18473921-18474156,18474299-18474460,
           18474731-18474948,18475048-18475120
          Length = 311

 Score = 36.7 bits (81), Expect = 0.014
 Identities = 23/98 (23%), Positives = 40/98 (40%)
 Frame = +1

Query: 268 VSGCNINYVKVGKGSHNLICLPGALGTIWTDYKPQIEGIDKNDFTLVAWDPPGYGKSRPP 447
           + G  ++   +GKG    +        +W  ++ Q+       F  +A D PGYG S PP
Sbjct: 12  IRGLKLHIAHIGKGEAATLLFVHGFPEVWYSWRHQMIAAAAAGFRAIALDFPGYGLSEPP 71

Query: 448 MKQFDVDFYEKDADYAFNFMKALNIPKYSILGWSDGGI 561
                  +     D     + +L+IPK  ++   D G+
Sbjct: 72  ADLTQASWQGLMND-LLAILDSLSIPKVFLVA-KDFGV 107


>10_08_0516 +
           18478743-18478830,18478940-18479319,18479406-18479641,
           18480280-18480538
          Length = 320

 Score = 35.5 bits (78), Expect = 0.032
 Identities = 28/113 (24%), Positives = 49/113 (43%), Gaps = 5/113 (4%)
 Frame = +1

Query: 268 VSGCNINYVKVGKGSHNL-----ICLPGALGTIWTDYKPQIEGIDKNDFTLVAWDPPGYG 432
           + G N++  +VGKG  +L     +        IW  ++ Q+       +  VA D  GYG
Sbjct: 12  IRGLNLHIAQVGKGEISLYELGTVVFLHGFPEIWYSWRHQMLAAAAAGYRAVAPDWRGYG 71

Query: 433 KSRPPMKQFDVDFYEKDADYAFNFMKALNIPKYSILGWSDGGITGIIHAAKYP 591
            S  P +Q +  + +  AD     + AL +P   ++G   G +     A ++P
Sbjct: 72  LSGQPPEQEEATWDDLVAD-VLAILDALAVPGAFLVGKDFGAMPAYDFALRHP 123


>03_06_0541 -
           34607071-34607353,34608167-34608399,34609093-34609275,
           34609357-34609659
          Length = 333

 Score = 31.9 bits (69), Expect = 0.40
 Identities = 22/111 (19%), Positives = 45/111 (40%), Gaps = 2/111 (1%)
 Frame = +1

Query: 235 STAVPKEEKVKVSGCNINYVKVGKGSHNL--ICLPGALGTIWTDYKPQIEGIDKNDFTLV 408
           + A  +   V+ +G +++  + G GS     +        +W  ++ Q+  +    +  V
Sbjct: 3   AAAAVRHRTVEANGISMHVAEAGPGSGTAPAVLFVHGFPELWYSWRHQMGHLAARGYRCV 62

Query: 409 AWDPPGYGKSRPPMKQFDVDFYEKDADYAFNFMKALNIPKYSILGWSDGGI 561
           A D  GYG +  P +      +    D     + AL +P+  ++G   G I
Sbjct: 63  APDLRGYGGTTAPPEHTSYTIFHLVGDLV-ALLDALELPQVFVVGHDWGAI 112


>01_01_1078 +
           8489872-8490168,8490280-8490462,8490667-8490908,
           8490988-8491240
          Length = 324

 Score = 30.7 bits (66), Expect = 0.92
 Identities = 19/73 (26%), Positives = 32/73 (43%), Gaps = 1/73 (1%)
 Frame = +1

Query: 232 MSTAVPKEEKVKV-SGCNINYVKVGKGSHNLICLPGALGTIWTDYKPQIEGIDKNDFTLV 408
           M+ A  +  +V+V SG  ++  + G     +  L      +W  ++ Q+  +    F  V
Sbjct: 1   MAAAAVRHREVEVASGVRLHVAESGPEGGPVALLVHGFPELWYSWRHQMRALAARGFRAV 60

Query: 409 AWDPPGYGKSRPP 447
           A D  GYG S  P
Sbjct: 61  APDLRGYGDSDAP 73


>01_01_1077 +
           8485655-8486134,8486423-8486554,8487725-8487966,
           8488254-8488500
          Length = 366

 Score = 30.7 bits (66), Expect = 0.92
 Identities = 19/73 (26%), Positives = 31/73 (42%), Gaps = 1/73 (1%)
 Frame = +1

Query: 232 MSTAVPKEEKVKV-SGCNINYVKVGKGSHNLICLPGALGTIWTDYKPQIEGIDKNDFTLV 408
           M+ A  +   V+V SG  ++  + G      + L      +W  ++ Q+  +    F  V
Sbjct: 1   MAAAEVRHRTVEVASGVRLHVAEAGPEDGPAVLLVHGFPELWYSWRHQMRALAARGFRAV 60

Query: 409 AWDPPGYGKSRPP 447
           A D  GYG S  P
Sbjct: 61  APDLRGYGDSDAP 73


>03_06_0542 - 34611864-34612364,34613932-34614132,34614745-34615059
          Length = 338

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 24/111 (21%), Positives = 45/111 (40%), Gaps = 2/111 (1%)
 Frame = +1

Query: 235 STAVPKEEKVKVSGCNINYVKVGK--GSHNLICLPGALGTIWTDYKPQIEGIDKNDFTLV 408
           + AV +   V+ +G +I+  + G   G    +        +W  ++ Q+E +    F  +
Sbjct: 7   AAAVIRHRTVEANGISIHVAEAGGEGGDGAAVLFLHGFPELWYSWRHQMEHLAGRGFRCL 66

Query: 409 AWDPPGYGKSRPPMKQFDVDFYEKDADYAFNFMKALNIPKYSILGWSDGGI 561
           A D  GYG +  P +      +    D     + AL + K  ++G   G I
Sbjct: 67  APDLRGYGDTDAPPEIESYSAFHVVGDLV-ALLDALGLAKVFVVGHDWGAI 116


>07_01_0233 - 1703602-1705623
          Length = 673

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 26/84 (30%), Positives = 33/84 (39%), Gaps = 3/84 (3%)
 Frame = +1

Query: 307 GSHNLICLPGALGTIWTDYKPQIEGIDKNDFTLVAWDPPGYGKSRPPMKQFDVDFYEKDA 486
           G HNL  + G    IW DY    + ID      VA  P    K   P+     D     +
Sbjct: 194 GFHNLSLISGEAMQIWIDYDGGAKQID------VALAPFKMAKPTKPLLSMPYDLSSVIS 247

Query: 487 DYAFNFMKA---LNIPKYSILGWS 549
           D A+  + A   L    + ILGWS
Sbjct: 248 DVAYVGLSAATGLAGSSHYILGWS 271


>06_01_1093 -
           8970996-8971667,8971756-8971902,8971982-8972118,
           8972343-8972612,8972731-8972868,8974965-8975394
          Length = 597

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = +1

Query: 331 PGALGTIWTDYKPQIEGIDKNDFTLVAWDPPGYGK 435
           PG LGT+W+  + Q  G  +      AW  PG G+
Sbjct: 15  PGQLGTLWSTLEDQRGGAREVPLLSSAWGLPGGGR 49


>01_05_0459 -
           22435374-22435397,22435517-22435691,22435881-22435974,
           22436103-22436267,22436566-22436687,22437224-22437306,
           22437473-22437591,22437890-22437935
          Length = 275

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 21/72 (29%), Positives = 35/72 (48%), Gaps = 3/72 (4%)
 Frame = +1

Query: 382 IDKNDFTLVAWDPPGYGKSRPPMKQFDVDFYEKDADYAFNFMKALNIPKY---SILGWSD 552
           + K    +  +D  G G+S     +F    Y K+AD   + +  LN  KY   +I+G S 
Sbjct: 67  LTKKGVGIFRFDFSGNGESEG---EFQYGNYRKEADDLHSVISHLNQEKYDVKAIVGHSK 123

Query: 553 GGITGIIHAAKY 588
           GG   +++A+ Y
Sbjct: 124 GGDVVVLYASIY 135


>12_02_1247 - 27322920-27323175,27323252-27323490,27324309-27324776
          Length = 320

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 16/72 (22%), Positives = 29/72 (40%)
 Frame = +1

Query: 232 MSTAVPKEEKVKVSGCNINYVKVGKGSHNLICLPGALGTIWTDYKPQIEGIDKNDFTLVA 411
           M   V +     V+G +++  + G      + L      +W  ++ Q+  +    F  +A
Sbjct: 1   MGGEVVRHWNADVNGISLHVAEQGPADGPPVLLIHGFPELWLSWRHQMAALAARGFRALA 60

Query: 412 WDPPGYGKSRPP 447
            D  GYG S  P
Sbjct: 61  PDLRGYGDSTVP 72


>01_06_0304 + 28340976-28342512,28342774-28342799,28343268-28343999
          Length = 764

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
 Frame = +1

Query: 421 PGYGKSRPPMKQFDVDFYEKDAD-YAFNFMKALNIPKYSILGWSDGGIT 564
           P  G+S  P+K+ D   Y KD     F  MKA  + +  ++G S GG++
Sbjct: 48  PQNGQSCSPLKEIDDVGYSKDCGALPFELMKA-RVAERLMVGVSHGGVS 95


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,002,110
Number of Sequences: 37544
Number of extensions: 278231
Number of successful extensions: 603
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 591
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 603
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1411925004
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)